Basic Information
Locus ID:
CQ.Regalona.r1.1BG0021340
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1B | 77563093 | 77569490 | + | CQ.Regalona.r1.1BG0021340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.54 | 69,611.92 Da | 42.16 | 87.20 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14014 | STKc_PknB_like | 45 | 310 | 3.50424E-43 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 45 | 307 | 3.7E-33 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 43 | 307 | 1.83E-51 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 23 | 128 | 1.6E-6 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 130 | 332 | 1.9E-40 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 44 | 315 | 31.212831 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 50 | 79 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 587 | 604 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 586 | 619 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32250.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_021848730.1 | E3 ubiquitin-protein ligase KEG [Spinacia oleracea] | 0 |
| Q8RWX4 | Protein KINASE OF THE OUTER CHLOROPLAST MEMBRANE 1 OS=Arabidopsis thaliana OX=3702 GN=KOC1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QSM4 | Protein kinase domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_151490 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg24014, jg25441 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25197 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah034732, Ah034733 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21157, Sbi_jg22646 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16532 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00016272 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl62325, Sgl66865 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016510, gene:ENSEOMG00000020750 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1BG0021340, CQ.Regalona.r1.2AG0023130 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30245490, pistato.v30250210, pistato.v30250230 |
| Apiaceae | Apium graveolens | 2 | Ag11G04418, Ag5G00143 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G010620, COCNU_11G007860 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711487 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.3272.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G02737, Ftri4G30896 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G32250.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024659m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g30000.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g010090.2N, BniB05g005870.2N |
| Casuarinaceae | Casuarina equisetifolia | 4 | Ceq02G0328, Ceq04G2354, Ceq04G2356, Ceq04G2357 |
| Casuarinaceae | Casuarina glauca | 4 | Cgl04G2556, Cgl04G2558, Cgl04G2560, Cgl04G2561 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g06120 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g25380 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8141 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.504, evm.TU.LG07.1459 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00013289, Pov_00034465 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G12566 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.2412, BH06.2207, CH06.2426 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0546020, gene-QOZ80_6BG0499410 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0745900.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_036764 |
| Poaceae | Oryza coarctata | 2 | Oco11G013590, Oco12G013740 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g43270.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G203000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0401674 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr05G008410, Chr10G018710, Chr11G003880 |
| Poaceae | Thinopyrum elongatum | 2 | Tel7E01G910500, Tel7E01G910600 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC7AG073260 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G523000.2, TraesCS7B02G440000.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb387270_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-40931 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g33121 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG16.1599, evm.TU.LG26.69 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g14300 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.861, evm.TU.Scaffold_18_RagTag.408 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13620, nbisL1-mrna-28115 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17161 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-7847, nbisL1-mrna-9108 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000004l.174, evm.TU.utg000023l.210 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00004103, Maker00018999 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-3771, nbisL1-mrna-7269 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23379 |
| Salicaceae | Populus euphratica | 2 | populus_peu04752, populus_peu12921 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132625831, gene-LOC132636183 |
| Solanaceae | Solanum chilense | 1 | SOLCI005035800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008358 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.939_chr01_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G1493, TC02G0517 |
| Zosteraceae | Zostera marina | 1 | Zosma03g37100.v3.1 |