Basic Information
Locus ID:
CQ.Regalona.r1.1BG0021010
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
L-type lectin-domain containing receptor kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1B | 77148961 | 77157100 | - | CQ.Regalona.r1.1BG0021010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.09 | 132,946.91 Da | 39.22 | 88.75 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06899 | lectin_legume_LecRK_Arcelin_ConA | 44 | 280 | 5.29287E-66 | IPR001220 |
| CDD | cd14066 | STKc_IRAK | 368 | 626 | 1.65645E-86 | - |
| Pfam | PF00139 | Legume lectin domain | 43 | 284 | 6.2E-48 | IPR001220 |
| Pfam | PF00069 | Protein kinase domain | 363 | 622 | 2.4E-45 | IPR000719 |
| Pfam | PF01189 | 16S rRNA methyltransferase RsmB/F | 909 | 977 | 4.8E-16 | IPR001678 |
| Pfam | PF01189 | 16S rRNA methyltransferase RsmB/F | 1061 | 1200 | 3.0E-20 | IPR001678 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 43 | 283 | 3.13E-48 | IPR013320 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 676 | 1200 | 4.84E-45 | IPR029063 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 346 | 641 | 4.1E-75 | IPR011009 |
| SUPERFAMILY | SSF88697 | PUA domain-like | 776 | 882 | 7.87E-10 | IPR015947 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 347 | 438 | 2.1E-29 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 868 | 1200 | 2.9E-64 | - |
| Gene3D | G3DSA:2.30.130.10 | PUA domain | 759 | 843 | 4.2E-7 | IPR036974 |
| Gene3D | G3DSA:2.60.120.200 | - | 40 | 300 | 1.2E-58 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 439 | 633 | 3.3E-57 | - |
| SMART | SM00220 | serkin_6 | 362 | 634 | 7.1E-37 | IPR000719 |
| SMART | SM00359 | pua_5 | 777 | 884 | 0.0071 | IPR002478 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 34 | 6.0 | - |
| ProSiteProfiles | PS51686 | SAM-dependent MTase RsmB/NOP-type domain profile. | 825 | 1202 | 36.23304 | IPR001678 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 362 | 634 | 36.400009 | IPR000719 |
| ProSiteProfiles | PS50890 | PUA domain profile. | 776 | 884 | 13.71217 | - |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 368 | 392 | - | IPR017441 |
| ProSitePatterns | PS01153 | NOL1/NOP2/sun family signature. | 1066 | 1077 | - | IPR018314 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 481 | 493 | - | IPR008271 |
| PRINTS | PR02008 | RNA (C5-cytosine) methyltransferase signature | 1184 | 1201 | 7.7E-13 | IPR023267 |
| PRINTS | PR02008 | RNA (C5-cytosine) methyltransferase signature | 920 | 930 | 7.7E-13 | IPR023267 |
| PRINTS | PR02008 | RNA (C5-cytosine) methyltransferase signature | 1115 | 1131 | 7.7E-13 | IPR023267 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G06560.1 | NOL1/NOP2/sun family protein. | 0 |
| RefSeq | XP_021769326.1 | L-type lectin-domain containing receptor kinase IX.1-like [Chenopodium quinoa] | 0 |
| Q84MA1 | rRNA (cytosine-C(5))-methyltransferase NOP2C OS=Arabidopsis thaliana OX=3702 GN=NOP2C PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QT17 | Protein kinase domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_144640 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg19066 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17866 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah034686 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g030160 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg22232 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16159 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008761 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl62704, Sgl67324, Sgl67538, Sgl67542 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016961, gene:ENSEOMG00000023418 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1BG0021010 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30013290 |
| Apiaceae | Apium graveolens | 1 | Ag2G01648 |
| Arecaceae | Cocos nucifera | 3 | COCNU_06G005940, COCNU_06G005950, COCNU_06G005960 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103707377 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1716.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri5G11115, FtriNA29572 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G06560.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007146m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g05320.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g001920.2N, BniB06g044070.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2190 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2269 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g10150 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0036s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g02550 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1249 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00001395 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.1302, BH08.1289, CH08.1397 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0627780, gene-QOZ80_8BG0656340 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0719480.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_032131 |
| Poaceae | Oryza coarctata | 2 | Oco15G007080, Oco16G006830 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g27824.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G119600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0703986, Pt_Chr0705444 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr20G007720, Chr29G007100 |
| Poaceae | Thinopyrum elongatum | 2 | Tel7E01G637100, Tel7E01G637200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG052450, gene_TRIDC7BG044900 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G375500.1, TraesCS7B02G277100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb170650_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-43220 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g22870 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.2516, evm.TU.LG17.1559 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc04g00150, gene.Posoc04g08660 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.1248 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11718 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8029 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11204 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.728 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013860 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9816 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19939 |
| Salicaceae | Populus euphratica | 1 | populus_peu14994 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616621 |
| Solanaceae | Solanum chilense | 1 | SOLCI006140700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026500 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7321 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G1533 |
| Zosteraceae | Zostera marina | 1 | Zosma03g00610.v3.1 |