Basic Information
Locus ID:
CQ.Regalona.r1.1BG0018510
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
FIZZY-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1B | 73934403 | 73937415 | - | CQ.Regalona.r1.1BG0018510 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.52 | 55,527.89 Da | 46.66 | 74.92 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 209 | 485 | 5.46064E-41 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 320 | 355 | 3.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 360 | 400 | 6.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 450 | 485 | 7.1E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 186 | 486 | 1.46E-61 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 145 | 487 | 1.9E-122 | IPR015943 |
| SMART | SM00320 | WD40_4 | 232 | 272 | 0.036 | IPR001680 |
| SMART | SM00320 | WD40_4 | 188 | 229 | 100.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 446 | 485 | 9.9E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 275 | 312 | 0.18 | IPR001680 |
| SMART | SM00320 | WD40_4 | 358 | 400 | 1.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 403 | 443 | 150.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 316 | 355 | 1.5E-7 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 365 | 409 | 8.837541 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 323 | 364 | 13.482671 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 453 | 486 | 11.761044 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 453 | 486 | 14.217871 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 240 | 281 | 8.67045 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 323 | 355 | 10.864685 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 387 | 401 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 472 | 486 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 11 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 108 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 170 | 190 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 112 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13840.1 | FIZZY-related 3. | 0 |
| RefSeq | XP_021769011.1 | protein FIZZY-RELATED 3-like [Chenopodium quinoa] | 0 |
| A0A396ISC0 | B-type cell cycle switch protein ccs52B OS=Medicago truncatula OX=3880 GN=CCS52B PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9S028 | WD_REPEATS_REGION domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_009880 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology