Basic Information
Locus ID:
CQ.Regalona.r1.1BG0016970
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1B | 72434989 | 72438485 | + | CQ.Regalona.r1.1BG0016970 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.96 | 69,540.94 Da | 34.22 | 69.87 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 18 | 148 | 4.5046E-45 | IPR033734 |
| CDD | cd09612 | Jacalin | 487 | 615 | 2.66461E-37 | IPR033734 |
| CDD | cd09612 | Jacalin | 280 | 409 | 3.16404E-36 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 280 | 409 | 6.5E-27 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 484 | 615 | 1.5E-32 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 18 | 149 | 5.1E-33 | IPR001229 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 7 | 149 | 1.96E-42 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 269 | 408 | 5.76E-36 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 473 | 614 | 1.13E-42 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 464 | 615 | 1.4E-54 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 261 | 409 | 9.3E-45 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 1 | 147 | 2.4E-54 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 280 | 410 | 6.0E-33 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 484 | 616 | 2.3E-45 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 18 | 149 | 1.3E-40 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 269 | 410 | 45.093132 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 7 | 149 | 48.919846 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 473 | 616 | 51.874294 | IPR001229 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 198 | 232 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 207 | 223 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19715.1 | Mannose-binding lectin superfamily protein. | 0 |
| RefSeq | XP_021759624.1 | uncharacterized protein LOC110724509 [Chenopodium quinoa] | 0 |
| F4HQX1 | Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LKG9 | DYW_deaminase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology