Basic Information
Locus ID:
CQ.Regalona.r1.1BG0016950
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1B | 72422194 | 72433451 | + | CQ.Regalona.r1.1BG0016950 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.01 | 67,780.94 Da | 43.20 | 71.80 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 436 | 567 | 3.16711E-43 | IPR033734 |
| CDD | cd09612 | Jacalin | 195 | 323 | 2.52946E-37 | IPR033734 |
| CDD | cd09612 | Jacalin | 25 | 156 | 2.27456E-44 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 25 | 156 | 2.8E-34 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 195 | 323 | 1.3E-27 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 436 | 567 | 1.6E-32 | IPR001229 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 14 | 155 | 9.94E-43 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 427 | 567 | 3.01E-41 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 185 | 323 | 4.32E-36 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 176 | 323 | 6.8E-46 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 423 | 567 | 2.8E-51 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 4 | 156 | 5.5E-51 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 25 | 157 | 3.6E-40 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 195 | 325 | 3.0E-35 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 436 | 568 | 1.1E-40 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 14 | 157 | 48.938606 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 425 | 568 | 49.717079 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 184 | 325 | 44.052044 | IPR001229 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19715.1 | Mannose-binding lectin superfamily protein. | 0 |
| RefSeq | XP_021759624.1 | uncharacterized protein LOC110724509 [Chenopodium quinoa] | 0 |
| F4HQX1 | Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LKG8 | Jacalin-related lectin 3-like OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology