Basic Information
Locus ID:
CQ.Regalona.r1.1BG0016040
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1B | 71451985 | 71457721 | - | CQ.Regalona.r1.1BG0016040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.22 | 75,745.14 Da | 33.30 | 71.53 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10320 | RGL4_N | 45 | 324 | 2.26241E-73 | - |
| CDD | cd10317 | RGL4_C | 475 | 661 | 7.40099E-55 | - |
| CDD | cd10316 | RGL4_M | 364 | 463 | 8.00342E-34 | IPR029413 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 473 | 660 | 1.2E-52 | IPR029411 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 387 | 458 | 6.4E-24 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 38 | 233 | 4.2E-88 | IPR010325 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 55 | 324 | 3.24E-8 | IPR011013 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 470 | 661 | 1.02E-48 | IPR008979 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 364 | 458 | 5.49E-8 | IPR013784 |
| Gene3D | G3DSA:2.60.120.260 | - | 471 | 661 | 3.8E-20 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 39 | 310 | 3.2E-11 | IPR014718 |
| Gene3D | G3DSA:2.60.40.1120 | - | 361 | 460 | 6.9E-8 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09890.4 | - | 0 |
| RefSeq | XP_021759798.1 | rhamnogalacturonate lyase B-like [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803LK80 | rhamnogalacturonan endolyase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology