Basic Information
Locus ID:
CQ.Regalona.r1.1BG0015990
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1B | 71382645 | 71394557 | - | CQ.Regalona.r1.1BG0015990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.20 | 101,786.37 Da | 29.71 | 72.28 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10317 | RGL4_C | 709 | 895 | 1.40355E-52 | - |
| CDD | cd10320 | RGL4_N | 270 | 565 | 1.52669E-59 | - |
| CDD | cd10316 | RGL4_M | 598 | 695 | 1.58635E-23 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 272 | 467 | 3.3E-72 | IPR010325 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 622 | 692 | 8.8E-18 | IPR029413 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 707 | 894 | 1.8E-51 | IPR029411 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 704 | 895 | 1.45E-45 | IPR008979 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 617 | 695 | 2.55E-6 | IPR013784 |
| Gene3D | G3DSA:2.60.120.260 | - | 705 | 895 | 9.2E-17 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 271 | 567 | 1.5E-9 | IPR014718 |
| Gene3D | G3DSA:2.60.40.1120 | - | 617 | 695 | 1.8E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 212 | 267 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 234 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09890.4 | - | 0 |
| RefSeq | XP_021759787.1 | probable rhamnogalacturonate lyase B isoform X1 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803LV70 | Rhamnogalacturonan endolyase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology