Basic Information
Locus ID:
CQ.Regalona.r1.1BG0015280
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Endochitinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1B | 70414490 | 70416896 | - | CQ.Regalona.r1.1BG0015280 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.89 | 35,051.23 Da | 39.90 | 66.40 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06921 | ChtBD1_GH19_hevein | 22 | 60 | 4.41368E-18 | - |
| CDD | cd00325 | chitinase_GH19 | 75 | 304 | 4.51747E-113 | - |
| Pfam | PF00182 | Chitinase class I | 74 | 304 | 2.2E-128 | IPR000726 |
| Pfam | PF00187 | Chitin recognition protein | 23 | 60 | 5.3E-15 | IPR001002 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 23 | 64 | 1.03E-13 | IPR036861 |
| SUPERFAMILY | SSF53955 | Lysozyme-like | 71 | 310 | 1.32E-105 | IPR023346 |
| Gene3D | G3DSA:3.30.60.10 | - | 21 | 62 | 9.9E-19 | IPR036861 |
| Gene3D | G3DSA:3.30.20.10 | Endochitinase, domain 2 | 157 | 213 | 1.7E-119 | - |
| Gene3D | G3DSA:1.10.530.10 | - | 79 | 310 | 1.7E-119 | - |
| SMART | SM00270 | ChitinBD_3 | 23 | 60 | 5.4E-18 | IPR001002 |
| PIRSF | PIRSF001060 | Endochitinase | 1 | 311 | 2.5E-123 | IPR016283 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 21 | 62 | 11.164287 | IPR001002 |
| ProSitePatterns | PS00774 | Chitinases family 19 signature 2. | 217 | 227 | - | IPR000726 |
| ProSitePatterns | PS00026 | Chitin recognition or binding domain signature. | 33 | 52 | - | IPR018371 |
| ProSitePatterns | PS00773 | Chitinases family 19 signature 1. | 92 | 114 | - | IPR000726 |
| PRINTS | PR00451 | Chitin-binding domain signature | 31 | 39 | 4.3E-7 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 39 | 46 | 4.3E-7 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 46 | 53 | 4.3E-7 | IPR001002 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12500.1 | basic chitinase. encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. | 0 |
| RefSeq | XP_021740345.1 | basic endochitinase-like [Chenopodium quinoa] | 0 |
| P51613 | Basic endochitinase OS=Vitis vinifera OX=29760 GN=CHIT1B PE=2 SV=1 | 0 | |
| TrEMBL | A0A803MEI4 | Chitin-binding type-1 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology