Basic Information
Locus ID:
CQ.Regalona.r1.1BG0015250
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Short Name:
UBP16
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1B | 70358278 | 70368710 | + | CQ.Regalona.r1.1BG0015250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.98 | 119,904.27 Da | 50.80 | 74.13 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 550 | 854 | 2.64389E-131 | - |
| Pfam | PF01753 | MYND finger | 78 | 115 | 9.8E-9 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 551 | 853 | 4.6E-46 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 547 | 858 | 6.28E-85 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 74 | 117 | 3.84E-11 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 544 | 865 | 3.2E-91 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 67 | 121 | 2.4E-11 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 551 | 856 | 50.016911 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 78 | 115 | 11.11871 | IPR002893 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 78 | 115 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 552 | 567 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 884 | 908 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1067 | 1097 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 293 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 975 | 998 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_021740339.1 | ubiquitin carboxyl-terminal hydrolase 16-like [Chenopodium quinoa] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MEI2 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology