HalophFGD

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Basic Information
Locus ID: CQ.Regalona.r1.1BG0013100
Species & Taxonomic ID: Chenopodium quinoa & 63459
Genome Assembly: GCA_040571445.1
Description: Belongs to the SecA family
Maps and Mapping Data
Chromosome Start End Strand ID
chr1B 67332003 67350604 - CQ.Regalona.r1.1BG0013100
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
6.32 120,413.15 Da 40.01 93.59 -0.26
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd18803 SF2_C_secA 480 746 1.84242E-60 IPR044722
CDD cd17928 DEXDc_SecA 110 474 5.68722E-122 -
Pfam PF07517 SecA DEAD-like domain 86 461 3.5E-115 IPR011115
Pfam PF07516 SecA Wing and Scaffold domain 781 1056 6.9E-44 IPR011116
Pfam PF01043 SecA preprotein cross-linking domain 329 418 6.2E-24 IPR011130
SUPERFAMILY SSF81767 Pre-protein crosslinking domain of SecA 298 427 3.01E-33 IPR036670
SUPERFAMILY SSF81886 Helical scaffold and wing domains of SecA 786 1065 1.57E-38 IPR036266
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 81 475 1.21E-69 IPR027417
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 492 765 9.24E-41 IPR027417
Gene3D G3DSA:3.40.50.300 - 477 783 9.9E-73 IPR027417
Gene3D G3DSA:1.10.3060.10 Helical scaffold and wing domains of SecA 923 1056 3.3E-18 -
Gene3D G3DSA:1.10.3060.10 Helical scaffold and wing domains of SecA 786 903 3.6E-14 -
Gene3D G3DSA:3.90.1440.10 - 300 428 2.1E-160 -
Gene3D G3DSA:3.40.50.300 - 90 475 2.1E-160 IPR027417
SMART SM00957 SecA_DEAD_2 75 462 3.2E-221 IPR011115
SMART SM00958 SecA_PP_bind_2 299 418 5.1E-34 IPR011130
TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 96 878 9.7E-257 IPR000185
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 157 298 14.495295 IPR014001
ProSiteProfiles PS51196 SecA family profile. 71 783 126.115364 IPR014018
ProSitePatterns PS01312 SecA family signature. 566 581 - IPR020937
PRINTS PR00906 SecA protein signature 473 486 1.2E-61 IPR000185
PRINTS PR00906 SecA protein signature 238 258 1.2E-61 IPR000185
PRINTS PR00906 SecA protein signature 131 155 1.2E-61 IPR000185
PRINTS PR00906 SecA protein signature 185 195 1.2E-61 IPR000185
PRINTS PR00906 SecA protein signature 399 421 1.2E-61 IPR000185
PRINTS PR00906 SecA protein signature 169 183 1.2E-61 IPR000185
PRINTS PR00906 SecA protein signature 436 453 1.2E-61 IPR000185
Hamap MF_01382 Protein translocase subunit SecA [secA]. 63 1059 17.288765 IPR000185
Gene Ontology
Biological Process:
GO:0006605 (protein targeting) GO:0006886 (intracellular protein transport) GO:0017038 (protein import)
Molecular Function:
GO:0005524 (ATP binding)
Cellular Component:
GO:0016020 (membrane)
KEGG Pathway
KO Term:
K03070 (preprotein translocase subunit SecA [EC:7.4.2.8])
Pathway:
ko02024 (Quorum sensing) map02024 (Quorum sensing) ko03060 (Protein export) map03060 (Protein export) ko03070 (Bacterial secretion system) map03070 (Bacterial secretion system)
Best hit
Source Best Hit ID Description E-value
TAIR AT1G21650.2 Preprotein translocase SecA family protein. Encodes a component of the thylakoid-localized Sec system involved in the translocation of cytoplasmic proteins into plastid. Loss-of-function mutations result in arrest at the globular stage and embryo lethality. 0
RefSeq XP_021760884.1 protein translocase subunit SECA2, chloroplastic-like [Chenopodium quinoa] 0
Swiss-Prot D8WUA4 Protein translocase subunit SECA2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SECA2 PE=1 SV=1 0
TrEMBL A0A0K9RXV0 Protein translocase subunit SecA OS=Spinacia oleracea OX=3562 GN=SOVF_022930 PE=3 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 2 jg10458, jg9019
Aizoaceae Mesembryanthemum crystallinum 2 gene_1077, gene_13408
Amaranthaceae Atriplex hortensis 2 Ah024121, Ah031607
Amaranthaceae Beta vulgaris 2 BVRB_1g010050, BVRB_5g122730
Amaranthaceae Salicornia bigelovii 5 Sbi_jg2775, Sbi_jg28369, Sbi_jg31191, Sbi_jg58082 ...
Sbi_jg58084
Amaranthaceae Salicornia europaea 2 Seu_jg25704, Seu_jg7111
Amaranthaceae Suaeda aralocaspica 2 GOSA_00004576, GOSA_00020180
Amaranthaceae Suaeda glauca 4 Sgl11665, Sgl17164, Sgl54639, Sgl59975
Amaranthaceae Chenopodium album 6 gene:ENSEOMG00000011856, gene:ENSEOMG00000013510 ...
gene:ENSEOMG00000031530, gene:ENSEOMG00000034341, gene:ENSEOMG00000044225, gene:ENSEOMG00000046942
Amaranthaceae Chenopodium quinoa 4 CQ.Regalona.r1.1AG0012840, CQ.Regalona.r1.1BG0013100 ...
CQ.Regalona.r1.8AG0010550, CQ.Regalona.r1.8BG0011700
Anacardiaceae Pistacia vera 2 pistato.v30007280, pistato.v30039110
Apiaceae Apium graveolens 3 Ag11G03939, Ag6G02443, Ag9G02368
Arecaceae Cocos nucifera 2 COCNU_01G000270, COCNU_15G003170
Arecaceae Phoenix dactylifera 2 gene-LOC103701417, gene-LOC103720122
Asparagaceae Asparagus officinalis 2 AsparagusV1_02.2259.V1.1, AsparagusV1_07.3638.V1.1
Asteraceae Flaveria trinervia 2 Ftri10G32559, Ftri18G11286
Brassicaceae Arabidopsis thaliana 2 AT1G21650.3, AT4G01800.2
Brassicaceae Eutrema salsugineum 2 Thhalv10006535m.g.v1.0, Thhalv10028392m.g.v1.0
Brassicaceae Schrenkiella parvula 2 Sp1g19170.v2.2, Sp6g01650.v2.2
Brassicaceae Brassica nigra 2 BniB03g009290.2N, BniB08g040660.2N
Casuarinaceae Casuarina equisetifolia 2 Ceq03G1867, Ceq06G0547
Casuarinaceae Casuarina glauca 2 Cgl03G2007, Cgl06G0567
Cymodoceaceae Cymodocea nodosa 2 gene.Cymno05g06910, gene.Cymno08g07140
Dunaliellaceae Dunaliella salina 2 Dusal.0027s00037.v1.0, Dusal.0035s00032.v1.0
Hydrocharitaceae Thalassia testudinum 2 gene.Thate01g16040, gene.Thate05g12950
Nitrariaceae Nitraria sibirica 2 evm.TU.LG04.547, evm.TU.LG06.839
Plantaginaceae Plantago ovata 2 Pov_00016539, Pov_00021694
Plumbaginaceae Limonium bicolor 2 Lb4G22942, Lb6G30841
Poaceae Echinochloa crus-galli 5 AH02.1497, BH02.1573, BH04.644, CH02.1719, CH04.655
Poaceae Eleusine coracana subsp. coracana 4 gene-QOZ80_1AG0015110, gene-QOZ80_1BG0063980 ...
gene-QOZ80_9AG0670100, gene-QOZ80_9BG0693570
Poaceae Hordeum vulgare 2 HORVU.MOREX.r3.3HG0259100.1, HORVU.MOREX.r3.4HG0347020.1
Poaceae Lolium multiflorum 3 gene-QYE76_052738, gene-QYE76_059523, gene-QYE76_064524
Poaceae Oryza coarctata 3 Oco01G009280, Oco02G009570, Oco22G003520
Poaceae Oryza sativa 2 LOC_Os01g21820.1, LOC_Os11g08980.1
Poaceae Paspalum vaginatum 2 gene-BS78_03G139800, gene-BS78_05G097000
Poaceae Puccinellia tenuiflora 2 Pt_Chr0103927, Pt_Chr0603665
Poaceae Sporobolus alterniflorus 6 Chr02G022280, Chr05G013160, Chr05G013200, Chr05G013210 ...
Chr16G010730, Chr17G009810
Poaceae Thinopyrum elongatum 2 Tel3E01G338700, Tel4E01G158600
Poaceae Triticum dicoccoides 4 gene_TRIDC3AG028190, gene_TRIDC3BG032070 ...
gene_TRIDC4AG034290, gene_TRIDC4BG015530
Poaceae Triticum aestivum 6 TraesCS3A02G198400.1, TraesCS3B02G222700.1 ...
TraesCS3D02G196700.2, TraesCS4A02G216200.1, TraesCS4B02G100000.1, TraesCS4D02G096200.1
Poaceae Zea mays 2 Zm00001eb090990_P001, Zm00001eb130760_P002
Poaceae Zoysia japonica 2 nbis-gene-27238, nbis-gene-6517
Poaceae Zoysia macrostachya 2 Zma_g10242, Zma_g18533
Portulacaceae Portulaca oleracea 3 evm.TU.LG04.1549, evm.TU.LG10.1366, evm.TU.LG11.1721
Posidoniaceae Posidonia oceanica 2 gene.Posoc01g13940, gene.Posoc05g18660
Rhizophoraceae Bruguiera sexangula 2 evm.TU.Scaffold_5_RagTag.729, evm.TU.Scaffold_7_RagTag.1138
Rhizophoraceae Carallia pectinifolia 2 nbisL1-mrna-10616, nbisL1-mrna-18708
Rhizophoraceae Ceriops tagal 2 nbisL1-mrna-103, nbisL1-mrna-5559
Rhizophoraceae Ceriops zippeliana 2 nbisL1-mrna-11369, nbisL1-mrna-13125
Rhizophoraceae Kandelia candel 2 evm.TU.utg000002l.412, evm.TU.utg000006l.609
Rhizophoraceae Kandelia obovata 2 Maker00011737, Maker00013085
Rhizophoraceae Rhizophora apiculata 2 nbisL1-mrna-10163, nbisL1-mrna-8110
Rhizophoraceae Rhizophora mangle 2 nbisL1-mrna-7364, nbisL1-mrna-9803
Salicaceae Populus euphratica 2 populus_peu27429, populus_peu32459
Solanaceae Lycium barbarum 2 gene-LOC132627149, gene-LOC132644885
Solanaceae Solanum chilense 2 SOLCI001197400, SOLCI003112400
Solanaceae Solanum pennellii 2 gene-LOC107002391, gene-LOC107004481
Tamaricaceae Reaumuria soongarica 2 gene_17557, gene_866
Tamaricaceae Tamarix chinensis 2 TC03G2545, TC07G1717
Zosteraceae Zostera marina 4 Zosma03g36860.v3.1, Zosma03g36910.v3.1, Zosma06g28380.v3.1 ...
Zosma07g00120.v3.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.