Basic Information
Locus ID:
CQ.Regalona.r1.1BG0011830
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
RNA-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1B | 64972825 | 64981233 | - | CQ.Regalona.r1.1BG0011830 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.86 | 26,625.52 Da | 42.51 | 69.31 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 148 | 216 | 4.1E-9 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 135 | 241 | 1.76E-14 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 142 | 233 | 1.1E-18 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 147 | 228 | 6.1E-4 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 146 | 232 | 11.809897 | IPR000504 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21320.2 | nucleotide binding;nucleic acid binding. | 0 |
| RefSeq | XP_021760995.1 | RNA-binding protein 2-like [Chenopodium quinoa] | 0 |
| G7ID19 | RNA-binding protein 2 OS=Medicago truncatula OX=3880 GN=RBP2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QXE2 | RRM domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_130520 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology