Basic Information
Locus ID:
CQ.Regalona.r1.1BG0011570
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
ubiquitin interaction motif-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1B | 64410296 | 64421879 | - | CQ.Regalona.r1.1BG0011570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.13 | 68,500.08 Da | 47.52 | 80.19 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13898 | Domain of unknown function (DUF4205) | 135 | 444 | 1.7E-61 | IPR025257 |
| SUPERFAMILY | SSF47473 | EF-hand | 442 | 503 | 8.33E-7 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 426 | 508 | 2.2E-6 | - |
| SMART | SM01174 | DUF4205_3 | 133 | 498 | 2.5E-144 | IPR025257 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 4 | 18 | 9.817494 | IPR003903 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 570 | 598 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 58 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G43690.1 | ubiquitin interaction motif-containing protein. | 0 |
| RefSeq | XP_021761020.1 | ubiquitin carboxyl-terminal hydrolase MINDY-3-like [Chenopodium quinoa] | 0 |
| Q0IIH8 | Ubiquitin carboxyl-terminal hydrolase MINDY-3 OS=Bos taurus OX=9913 GN=MINDY3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LHX5 | ubiquitinyl hydrolase 1 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg23084, jg6398 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_980 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah024407, Ah034321 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g011440 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39017, Sbi_jg54304 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg10889 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00023701 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl04450, Sgl15267, Sgl15339, Sgl20409 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015398, gene:ENSEOMG00000033626 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0014480, CQ.Regalona.r1.1BG0011570 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30037950 |
| Apiaceae | Apium graveolens | 1 | Ag7G02120 |
| Arecaceae | Cocos nucifera | 2 | COCNU_15G001570, scaffold031157G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103701205, gene-LOC103703168 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.156.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri2G16653 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G43690.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10011324m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g32700.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g065220.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1966 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2114 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g08070 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0461s00012.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g20320 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1829 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.198 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00015627 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb6G31489, Lb7G34394 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.971, BH09.1047, CH09.1183 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0317920, gene-QOZ80_4BG0349310 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0167660.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_043882 |
| Poaceae | Oryza coarctata | 2 | Oco07G005690, Oco08G005620 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g34440.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G091700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0302764 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G013240, Chr25G011460, Chr26G006350, Chr30G011040 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G530300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG043430, gene_TRIDC2BG046260 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G299800.2, TraesCS2B02G316300.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb422260_P001, Zm00001eb422280_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-37887 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g19682 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.1129, evm.TU.LG14.471 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g20920 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.538 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18609, nbisL1-mrna-9722 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10369 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18114 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.652 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003481 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9637 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18638 |
| Salicaceae | Populus euphratica | 4 | populus_peu14873, populus_peu14874, populus_peu32547 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627319 |
| Solanaceae | Solanum chilense | 1 | SOLCI006060400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018006 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_15715 |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G2861, TC09G1918 |
| Zosteraceae | Zostera marina | 1 | Zosma04g23860.v3.1 |