Basic Information
Locus ID:
CQ.Regalona.r1.1BG0009390
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1B | 57498318 | 57513411 | - | CQ.Regalona.r1.1BG0009390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 69,438.03 Da | 46.52 | 90.83 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18312 | BTB_POZ_NPY3-like | 19 | 123 | 8.2198E-47 | - |
| Pfam | PF03000 | NPH3 family | 213 | 476 | 5.7E-95 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 27 | 113 | 4.7E-7 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 17 | 114 | 1.33E-17 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 11 | 168 | 3.6E-12 | IPR011333 |
| SMART | SM00225 | BTB_4 | 28 | 121 | 0.0086 | IPR000210 |
| ProSiteProfiles | PS50873 | Plant heme peroxidase family profile. | 88 | 388 | 8.642595 | IPR002016 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 213 | 500 | 93.960899 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 28 | 97 | 11.192007 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 599 | 628 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 262 | 283 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 262 | 281 | - | - |
| Coils | Coil | Coil | 540 | 574 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G30440.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_021714811.1 | BTB/POZ domain-containing protein At1g30440-like isoform X1 [Chenopodium quinoa] | 0 |
| Q9S9Q9 | BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana OX=3702 GN=At1g30440 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803N9X6 | BTB/POZ domain-containing protein At1g30440 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology