halophFGD

Basic Information

Locus ID: CQ.Regalona.r1.1BG0006650

Species & Taxonomic ID: Chenopodium quinoa & 63459

Genome Assembly: GCA_040571445.1

Description: F-box FBD LRR-repeat protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1B	38253020	38262577	+	CQ.Regalona.r1.1BG0006650

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.80	49,422.71 Da	50.24	101.59	-0.11

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF08387	FBD	356	395	1.6E-7	IPR006566
Pfam	PF00646	F-box domain	19	54	7.5E-4	IPR001810
SUPERFAMILY	SSF81383	F-box domain	16	68	3.92E-8	IPR036047
SUPERFAMILY	SSF52047	RNI-like	135	402	6.28E-15	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	94	417	1.9E-13	IPR032675
SMART	SM00579	9598neu4hmm	356	425	1.5E-5	IPR006566
ProSiteProfiles	PS50181	F-box domain profile.	17	51	8.649649	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G13570.1	F-box/RNI-like superfamily protein.
RefSeq	XP_021718694.1	F-box/FBD/LRR-repeat protein At1g13570-like [Chenopodium quinoa]
Swiss-Prot	Q9FZ70	F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana OX=3702 GN=At1g13570 PE=2 SV=1
TrEMBL	A0A803N7B4	F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	8	jg10744, jg11924, jg22826, jg36910, jg6178, jg6179, jg6182 ... jg9212
Aizoaceae	Mesembryanthemum crystallinum	20	gene_17021, gene_18087, gene_18358, gene_18360, gene_18361 ... gene_18362, gene_18367, gene_18370, gene_18373, gene_18377, gene_18420, gene_20587, gene_20589, gene_23682, gene_3929, gene_3933, gene_3934, gene_3935, gene_3937, gene_9360
Amaranthaceae	Atriplex hortensis	27	Ah014703, Ah014704, Ah014705, Ah014706, Ah026000, Ah026003 ... Ah026055, Ah026067, Ah026140, Ah026164, Ah026166, Ah026167, Ah026168, Ah026181, Ah026184, Ah026186, Ah026188, Ah026190, Ah026191, Ah026192, Ah026208, Ah035663, Ah036950, Ah036951, Ah036952, Ah036953, Ah037003
Amaranthaceae	Beta vulgaris	11	BVRB_1g013300, BVRB_2g028670, BVRB_5g116960, BVRB_6g140480 ... BVRB_6g140500, BVRB_6g140510, BVRB_6g140520, BVRB_6g140570, BVRB_8g197890, BVRB_8g197900, BVRB_8g197910
Amaranthaceae	Salicornia bigelovii	13	Sbi_jg12820, Sbi_jg13527, Sbi_jg21713, Sbi_jg22104 ... Sbi_jg2621, Sbi_jg39500, Sbi_jg50079, Sbi_jg52879, Sbi_jg53065, Sbi_jg53068, Sbi_jg53069, Sbi_jg53071, Sbi_jg54835
Amaranthaceae	Salicornia europaea	11	Seu_jg10437, Seu_jg14831, Seu_jg16031, Seu_jg21302 ... Seu_jg2373, Seu_jg24278, Seu_jg24279, Seu_jg8800, Seu_jg8804, Seu_jg8805, Seu_jg9493
Amaranthaceae	Suaeda aralocaspica	10	GOSA_00008651, GOSA_00008676, GOSA_00013032, GOSA_00021754 ... GOSA_00026284, GOSA_00026290, GOSA_00026588, GOSA_00026590, GOSA_00026592, GOSA_00028318
Amaranthaceae	Suaeda glauca	43	Sgl12869, Sgl18109, Sgl30992, Sgl32758, Sgl32759, Sgl32760 ... Sgl32763, Sgl32765, Sgl32847, Sgl32849, Sgl32851, Sgl33052, Sgl33053, Sgl34050, Sgl34052, Sgl34058, Sgl34178, Sgl34264, Sgl36338, Sgl37793, Sgl38044, Sgl38045, Sgl38046, Sgl38047, Sgl38125, Sgl38127, Sgl38130, Sgl38287, Sgl38288, Sgl38477, Sgl38478, Sgl39436, Sgl39438, Sgl39446, Sgl39475, Sgl39655, Sgl58328, Sgl65546, Sgl65621, Sgl68030, Sgl68031, Sgl69869, Sgl69917
Amaranthaceae	Chenopodium album	25	gene:ENSEOMG00000000539, gene:ENSEOMG00000001202 ... gene:ENSEOMG00000001316, gene:ENSEOMG00000001803, gene:ENSEOMG00000002193, gene:ENSEOMG00000002780, gene:ENSEOMG00000002877, gene:ENSEOMG00000003751, gene:ENSEOMG00000010356, gene:ENSEOMG00000015935, gene:ENSEOMG00000018105, gene:ENSEOMG00000019135, gene:ENSEOMG00000019841, gene:ENSEOMG00000022405, gene:ENSEOMG00000024618, gene:ENSEOMG00000025811, gene:ENSEOMG00000027139, gene:ENSEOMG00000028178, gene:ENSEOMG00000030585, gene:ENSEOMG00000038999, gene:ENSEOMG00000041863, gene:ENSEOMG00000046205, gene:ENSEOMG00000049146, gene:ENSEOMG00000050584, gene:ENSEOMG00000052119
Amaranthaceae	Chenopodium quinoa	32	CQ.Regalona.r1.1AG0019890, CQ.Regalona.r1.1BG0006650 ... CQ.Regalona.r1.2AG0017490, CQ.Regalona.r1.2BG0019230, CQ.Regalona.r1.2BG0019240, CQ.Regalona.r1.2BG0019250, CQ.Regalona.r1.6AG0015560, CQ.Regalona.r1.6AG0015900, CQ.Regalona.r1.6AG0015910, CQ.Regalona.r1.6AG0015920, CQ.Regalona.r1.6AG0015930, CQ.Regalona.r1.6AG0015940, CQ.Regalona.r1.6AG0015950, CQ.Regalona.r1.6AG0015960, CQ.Regalona.r1.6BG0016420, CQ.Regalona.r1.6BG0016780, CQ.Regalona.r1.6BG0016810, CQ.Regalona.r1.6BG0016820, CQ.Regalona.r1.6BG0016840, CQ.Regalona.r1.6BG0016850, CQ.Regalona.r1.6BG0016860, CQ.Regalona.r1.6BG0016870, CQ.Regalona.r1.6BG0016880, CQ.Regalona.r1.6BG0016890, CQ.Regalona.r1.6BG0016900, CQ.Regalona.r1.6BG0016910, CQ.Regalona.r1.6BG0016920, CQ.Regalona.r1.6BG0016940, CQ.Regalona.r1.6BG0017020, CQ.Regalona.r1.7BG0021300, CQ.Regalona.r1.8AG0018820, CQ.Regalona.r1.8BG0023540
Anacardiaceae	Pistacia vera	2	pistato.v30046040, pistato.v30226170
Apiaceae	Apium graveolens	3	Ag2G00300, Ag6G00868, Ag6G00869
Arecaceae	Cocos nucifera	2	COCNU_01G004600, COCNU_14G004580
Arecaceae	Phoenix dactylifera	2	gene-LOC103707431, gene-LOC103713595
Asparagaceae	Asparagus officinalis	4	AsparagusV1_01.3103.V1.1, AsparagusV1_01.3124.V1.1 ... AsparagusV1_01.524.V1.1, AsparagusV1_03.1545.V1.1
Asteraceae	Flaveria trinervia	16	Ftri12G10443, Ftri12G11543, Ftri12G22226, Ftri16G08488 ... Ftri16G11835, Ftri16G25159, Ftri16G29400, Ftri18G20270, Ftri1G07571, Ftri2G16550, Ftri4G32514, Ftri8G27739, FtriNA14157, FtriNA22755, FtriNA23770, FtriNA31334
Brassicaceae	Arabidopsis thaliana	1	AT1G13570.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10007748m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp1g11955.v2.2
Brassicaceae	Brassica nigra	1	BniB06g038300.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq03G1654, Ceq07G0487, Ceq07G0488, Ceq07G0491
Casuarinaceae	Casuarina glauca	4	Cgl03G1775, Cgl07G0510, Cgl07G0512, Cgl07G0513
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno14g02970, gene.Cymno17g05740
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-1784
Nitrariaceae	Nitraria sibirica	12	evm.TU.LG02.2059, evm.TU.LG02.368, evm.TU.LG02.371 ... evm.TU.LG02.375, evm.TU.LG02.376, evm.TU.LG02.377, evm.TU.LG02.379, evm.TU.LG02.380, evm.TU.LG02.813, evm.TU.LG03.461, evm.TU.LG06.527, evm.TU.LG11.76
Plantaginaceae	Plantago ovata	6	Pov_00003701, Pov_00026791, Pov_00027371, Pov_00027389 ... Pov_00028629, Pov_00037959
Plumbaginaceae	Limonium bicolor	34	Lb0G36955, Lb0G36974, Lb0G37131, Lb0G37286, Lb0G37384 ... Lb0G37738, Lb1G01026, Lb1G01032, Lb1G01692, Lb1G01718, Lb1G01751, Lb1G01752, Lb1G01756, Lb1G01757, Lb1G02508, Lb1G03002, Lb2G10600, Lb2G14239, Lb2G15133, Lb3G16606, Lb3G16607, Lb3G16685, Lb3G16689, Lb3G17037, Lb3G17038, Lb3G17041, Lb3G17393, Lb3G18711, Lb3G19828, Lb4G25377, Lb4G25527, Lb6G32033, Lb6G32638, Lb7G34852
Poaceae	Echinochloa crus-galli	33	AH03.2092, AH03.2094, AH05.2444, AH06.1422, AH07.1875 ... AH08.1799, AH08.1800, AH08.1801, BH03.2319, BH03.2320, BH05.2538, BH06.1421, BH06.1422, BH06.1423, BH07.1464, BH08.1836, BH08.1838, BH08.1839, BH08.1840, BH08.1841, BH08.1842, CH01.2479, CH03.2401, CH05.2636, CH06.1579, CH06.1580, CH07.1891, CH08.2000, CH08.2001, CH08.2002, CH08.2003, CH08.2004, CH08.2005
Poaceae	Eleusine coracana subsp. coracana	23	gene-QOZ80_1AG0021460, gene-QOZ80_2AG0110620 ... gene-QOZ80_2BG0164100, gene-QOZ80_5BG0420390, gene-QOZ80_6AG0536590, gene-QOZ80_6AG0536600, gene-QOZ80_6AG0536630, gene-QOZ80_6BG0489930, gene-QOZ80_6BG0489940, gene-QOZ80_8AG0633410, gene-QOZ80_8AG0633430, gene-QOZ80_8AG0633460, gene-QOZ80_8BG0662470, gene-QOZ80_8BG0662500, gene-QOZ80_8BG0662510, gene-QOZ80_8BG0662520, gene-QOZ80_8BG0662530, gene-QOZ80_8BG0662540, gene-QOZ80_8BG0662570, gene-QOZ80_8BG0662580, gene-QOZ80_UnG0727010, gene-QOZ80_UnG0727020, gene-QOZ80_UnG0727030
Poaceae	Hordeum vulgare	8	HORVU.MOREX.r3.1HG0066230.1, HORVU.MOREX.r3.3HG0326030.1 ... HORVU.MOREX.r3.3HG0326100.1, HORVU.MOREX.r3.3HG0326110.1, HORVU.MOREX.r3.3HG0326130.1, HORVU.MOREX.r3.3HG0326140.1.CDS1, HORVU.MOREX.r3.3HG0326160.1.CDS1, HORVU.MOREX.r3.5HG0479950.1
Poaceae	Lolium multiflorum	30	gene-QYE76_002265, gene-QYE76_005477, gene-QYE76_005478 ... gene-QYE76_005480, gene-QYE76_005481, gene-QYE76_005483, gene-QYE76_005484, gene-QYE76_005485, gene-QYE76_005486, gene-QYE76_005487, gene-QYE76_005489, gene-QYE76_005490, gene-QYE76_005492, gene-QYE76_013234, gene-QYE76_020276, gene-QYE76_022771, gene-QYE76_027288, gene-QYE76_035185, gene-QYE76_035186, gene-QYE76_041497, gene-QYE76_048226, gene-QYE76_049736, gene-QYE76_049738, gene-QYE76_049740, gene-QYE76_049743, gene-QYE76_049750, gene-QYE76_049752, gene-QYE76_049753, gene-QYE76_057336, gene-QYE76_057352
Poaceae	Oryza coarctata	12	Oco03G011780, Oco03G011790, Oco04G012190, Oco04G012200 ... Oco04G012210, Oco13G006670, Oco14G007200, Oco15G010180, Oco15G013200, Oco15G013210, Oco16G009350, Oco18G006030
Poaceae	Oryza sativa	16	LOC_Os02g33310.1, LOC_Os02g33400.1, LOC_Os02g33410.1 ... LOC_Os02g44750.1, LOC_Os08g35870.2, LOC_Os08g35880.1, LOC_Os08g35900.2, LOC_Os08g35910.1, LOC_Os08g35930.1, LOC_Os08g35939.1, LOC_Os08g35948.1, LOC_Os08g35960.1, LOC_Os08g36000.1, LOC_Os08g36010.1, LOC_Os09g27090.1, LOC_Os09g27100.1
Poaceae	Paspalum vaginatum	9	gene-BS78_02G197400, gene-BS78_04G154200 ... gene-BS78_05G017800, gene-BS78_05G017900, gene-BS78_05G018100, gene-BS78_09G144800, gene-BS78_09G236300, gene-BS78_09G236400, gene-BS78_09G236600
Poaceae	Puccinellia tenuiflora	14	Pt_Chr0202802, Pt_Chr0206691, Pt_Chr0206692, Pt_Chr0206693 ... Pt_Chr0404310, Pt_Chr0504145, Pt_Chr0505241, Pt_Chr0700187, Pt_Chr0702020, Pt_Chr0702021, Pt_Chr0702082, Pt_Chr0702083, Pt_Chr0702084, Pt_Chr0702388
Poaceae	Sporobolus alterniflorus	11	Chr02G017270, Chr03G009300, Chr05G016680, Chr06G031670 ... Chr06G031680, Chr10G008980, Chr12G017520, Chr16G015380, Chr17G014790, Chr19G016500, Chr29G004320
Poaceae	Thinopyrum elongatum	9	Tel1E01G427800, Tel3E01G857300, Tel3E01G865400 ... Tel5E01G345100, Tel5E01G345200, Tel5E01G345300, Tel5E01G345500, Tel5E01G345600, Tel5E01G345700
Poaceae	Triticum dicoccoides	13	gene_TRIDC3AG072960, gene_TRIDC3AG073000 ... gene_TRIDC3AG073020, gene_TRIDC3BG084080, gene_TRIDC3BG084110, gene_TRIDC3BG084150, gene_TRIDC5AG033590, gene_TRIDC5AG033600, gene_TRIDC5AG033610, gene_TRIDC5BG035420, gene_TRIDC5BG035430, gene_TRIDC5BG035440, gene_TRIDC5BG035450
Poaceae	Triticum aestivum	55	TraesCS1A02G259300.2, TraesCS1A02G259400.1 ... TraesCS1B02G269700.3, TraesCS1D02G259100.1, TraesCS1D02G259200.1, TraesCS3A02G514300.2, TraesCS3A02G514600.1, TraesCS3A02G514700.1, TraesCS3A02G514800.1, TraesCS3A02G514900.1, TraesCS3A02G515000.1.cds1, TraesCS3A02G515100.1, TraesCS3A02G515200.1.cds1, TraesCS3A02G515400.1, TraesCS3A02G515500.1, TraesCS3A02G515600.1, TraesCS3A02G515700.1, TraesCS3A02G515800.1, TraesCS3A02G515900.1, TraesCS3A02G516100.1, TraesCS3B02G583000.2, TraesCS3B02G583100.1, TraesCS3B02G583200.1, TraesCS3B02G583300.1, TraesCS3B02G583400.1, TraesCS3B02G583500.1, TraesCS3B02G583700.1, TraesCS3B02G583800.1, TraesCS3B02G583900.1, TraesCS3B02G584000.1, TraesCS3B02G584100.1, TraesCS3D02G520300.1, TraesCS3D02G520400.1, TraesCS3D02G523000.1, TraesCS3D02G523100.1, TraesCS3D02G523400.2, TraesCS3D02G523500.1, TraesCS3D02G523600.1, TraesCS3D02G523700.1, TraesCS3D02G523800.1, TraesCS5A02G208400.2, TraesCS5A02G208500.2, TraesCS5A02G208600.1, TraesCS5A02G208700.1.cds1, TraesCS5B02G206400.1, TraesCS5B02G206600.1, TraesCS5B02G206700.1.cds1, TraesCS5B02G206800.1, TraesCS5B02G206900.1, TraesCS5B02G207000.1, TraesCS5D02G214500.1, TraesCS5D02G214700.2, TraesCS5D02G214800.1, TraesCS5D02G329700.1, TraesCSU02G053900.1
Poaceae	Zea mays	3	Zm00001eb288120_P001, Zm00001eb295980_P002 ... Zm00001eb295990_P002
Poaceae	Zoysia japonica	1	nbis-gene-39146
Portulacaceae	Portulaca oleracea	36	evm.TU.LG03.12, evm.TU.LG03.126, evm.TU.LG03.131 ... evm.TU.LG03.133, evm.TU.LG03.134, evm.TU.LG03.135, evm.TU.LG03.136, evm.TU.LG03.137, evm.TU.LG03.16, evm.TU.LG03.20, evm.TU.LG03.26, evm.TU.LG03.6, evm.TU.LG03.8, evm.TU.LG03.9, evm.TU.LG04.1193, evm.TU.LG05.1730, evm.TU.LG05.695, evm.TU.LG07.780, evm.TU.LG07.781, evm.TU.LG07.782, evm.TU.LG07.783, evm.TU.LG10.369, evm.TU.LG13.573, evm.TU.LG13.577, evm.TU.LG13.578, evm.TU.LG13.579, evm.TU.LG13.586, evm.TU.LG15.147, evm.TU.LG15.148, evm.TU.LG15.149, evm.TU.LG15.150, evm.TU.LG15.151, evm.TU.LG17.364, evm.TU.LG21.279, evm.TU.LG23.672, evm.TU.LG25.624
Posidoniaceae	Posidonia oceanica	11	gene.Posoc02g04320, gene.Posoc02g13540, gene.Posoc02g28760 ... gene.Posoc03g08270, gene.Posoc04g00390, gene.Posoc04g06420, gene.Posoc04g06510, gene.Posoc04g06520, gene.Posoc04g17290, gene.Posoc06g01750, gene.Posoc10g02380
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_15_RagTag.17, evm.TU.Scaffold_8_RagTag.1055
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-23710, nbisL1-mrna-26301, nbisL1-mrna-26303 ... nbisL1-mrna-8986
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-6031
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-15416, nbisL1-mrna-17374
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000001l.16, evm.TU.utg000018l.351
Rhizophoraceae	Kandelia obovata	2	Maker00003279, Maker00004680
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-18588, nbisL1-mrna-24407
Salicaceae	Populus euphratica	7	populus_peu06955, populus_peu06993, populus_peu20938 ... populus_peu20939, populus_peu20940, populus_peu25057, populus_peu31926
Solanaceae	Lycium barbarum	62	gene-LOC132599552, gene-LOC132600653, gene-LOC132613156 ... gene-LOC132613208, gene-LOC132614040, gene-LOC132614150, gene-LOC132614370, gene-LOC132614442, gene-LOC132614550, gene-LOC132614575, gene-LOC132614772, gene-LOC132614878, gene-LOC132614902, gene-LOC132614937, gene-LOC132614946, gene-LOC132615038, gene-LOC132615052, gene-LOC132615062, gene-LOC132615318, gene-LOC132615492, gene-LOC132615519, gene-LOC132615546, gene-LOC132615549, gene-LOC132615558, gene-LOC132615666, gene-LOC132615881, gene-LOC132619999, gene-LOC132620100, gene-LOC132622228, gene-LOC132624822, gene-LOC132627951, gene-LOC132628805, gene-LOC132628807, gene-LOC132628810, gene-LOC132628811, gene-LOC132628920, gene-LOC132629095, gene-LOC132635505, gene-LOC132635507, gene-LOC132637260, gene-LOC132638266, gene-LOC132639682, gene-LOC132639802, gene-LOC132639803, gene-LOC132639806, gene-LOC132639910, gene-LOC132639911, gene-LOC132639924, gene-LOC132641257, gene-LOC132641258, gene-LOC132641563, gene-LOC132641564, gene-LOC132641565, gene-LOC132641877, gene-LOC132641878, gene-LOC132641879, gene-LOC132641881, gene-LOC132641884, gene-LOC132641885, gene-LOC132641917, gene-LOC132642657, gene-LOC132642730
Solanaceae	Solanum chilense	26	SOLCI000542900, SOLCI000932100, SOLCI001154700 ... SOLCI002083100, SOLCI002781600, SOLCI003062100, SOLCI003216400, SOLCI003582100, SOLCI003744200, SOLCI004001400, SOLCI004108100, SOLCI004410200, SOLCI004492000, SOLCI005384900, SOLCI005385000, SOLCI005385200, SOLCI005549900, SOLCI005810300, SOLCI005810600, SOLCI005810700, SOLCI005816400, SOLCI007296600, SOLCI007478800, SOLCI007478900, SOLCI007479100, SOLCI007479200
Solanaceae	Solanum pennellii	27	gene-LOC107003243, gene-LOC107003582, gene-LOC107004358 ... gene-LOC107004379, gene-LOC107004551, gene-LOC107004553, gene-LOC107004780, gene-LOC107005587, gene-LOC107013412, gene-LOC107016228, gene-LOC107016395, gene-LOC107016396, gene-LOC107016422, gene-LOC107016604, gene-LOC107017297, gene-LOC107018425, gene-LOC107018697, gene-LOC107018870, gene-LOC107019175, gene-LOC107019218, gene-LOC107019219, gene-LOC107019232, gene-LOC107021872, gene-LOC107024293, gene-LOC107028040, gene-LOC107028294, gene-LOC114077319
Tamaricaceae	Reaumuria soongarica	7	MSTRG.569_chr01_+, STRG.22371_chr10_+, STRG.22376_chr10_+ ... STRG.30028_chr10_+, STRG.30070_chr10_+, STRG.318_chr01_+, gene_212
Tamaricaceae	Tamarix chinensis	9	TC01G0650, TC01G0663, TC01G0671, TC01G0679, TC01G0682 ... TC01G0686, TC01G0689, TC03G0268, TC05G2465
Zosteraceae	Zostera marina	7	Zosma01g23250.v3.1, Zosma01g33450.v3.1, Zosma01g33460.v3.1 ... Zosma01g33470.v3.1, Zosma02g01480.v3.1, Zosma02g14370.v3.1, Zosma06g06350.v3.1