Basic Information
Locus ID:
CQ.Regalona.r1.1BG0002140
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1B | 4813429 | 4817052 | + | CQ.Regalona.r1.1BG0002140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.56 | 33,704.92 Da | 57.89 | 71.87 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 26 | 110 | 1.59788E-38 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 213 | 278 | 1.9702E-19 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 27 | 110 | 1.1E-17 | IPR001606 |
| Pfam | PF00505 | HMG (high mobility group) box | 213 | 281 | 4.6E-14 | IPR009071 |
| SUPERFAMILY | SSF46774 | ARID-like | 17 | 126 | 2.75E-29 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 204 | 284 | 1.7E-20 | IPR036910 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 197 | 293 | 1.0E-19 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 14 | 124 | 7.2E-25 | IPR036431 |
| SMART | SM00501 | bright_3 | 24 | 115 | 7.0E-25 | IPR001606 |
| SMART | SM01014 | ARID_2 | 20 | 110 | 7.9E-27 | - |
| SMART | SM00398 | hmgende2 | 212 | 282 | 3.0E-17 | IPR009071 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 213 | 281 | 15.156465 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 23 | 114 | 24.923512 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 185 | 219 | - | - |
| Coils | Coil | Coil | 263 | 290 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76110.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_021737119.1 | high mobility group B protein 9-like isoform X2 [Chenopodium quinoa] | 0 |
| Q9SGS2 | High mobility group B protein 9 OS=Arabidopsis thaliana OX=3702 GN=HMGB9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MX19 | High mobility group B protein 9 OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology