Basic Information
Locus ID:
CQ.Regalona.r1.1AG0022200
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
High mobility group B protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1A | 59118340 | 59119004 | - | CQ.Regalona.r1.1AG0022200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.41 | 16,041.14 Da | 51.29 | 85.67 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 26 | 110 | 1.05687E-40 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 27 | 110 | 2.1E-19 | IPR001606 |
| SUPERFAMILY | SSF46774 | ARID-like | 17 | 123 | 5.1E-31 | IPR036431 |
| Gene3D | G3DSA:1.10.150.60 | - | 13 | 124 | 3.8E-27 | IPR036431 |
| SMART | SM01014 | ARID_2 | 20 | 110 | 3.0E-28 | - |
| SMART | SM00501 | bright_3 | 24 | 115 | 3.3E-28 | IPR001606 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 23 | 114 | 26.068094 | IPR001606 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76110.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_021756155.1 | high mobility group B protein 9-like [Chenopodium quinoa] | 0 |
| Q9SGS2 | High mobility group B protein 9 OS=Arabidopsis thaliana OX=3702 GN=HMGB9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LIQ6 | High mobility group B protein 9 OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology