Basic Information
Locus ID:
CQ.Regalona.r1.1AG0022190
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1A | 59117118 | 59117685 | - | CQ.Regalona.r1.1AG0022190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.12 | 15,570.33 Da | 58.83 | 43.73 | -1.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 53 | 118 | 1.39986E-19 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 53 | 121 | 2.4E-15 | IPR009071 |
| SUPERFAMILY | SSF47095 | HMG-box | 44 | 124 | 7.33E-22 | IPR036910 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 36 | 133 | 3.2E-21 | IPR036910 |
| SMART | SM00398 | hmgende2 | 52 | 122 | 4.2E-18 | IPR009071 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 53 | 121 | 15.125688 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 60 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 48 | - | - |
| Coils | Coil | Coil | 103 | 130 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76110.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_021756155.1 | high mobility group B protein 9-like [Chenopodium quinoa] | 0 |
| Q9SGS2 | High mobility group B protein 9 OS=Arabidopsis thaliana OX=3702 GN=HMGB9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LIQ6 | High mobility group B protein 9 OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology