Basic Information
Locus ID:
CQ.Regalona.r1.1AG0021820
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
E3 ubiquitin-protein ligase RLIM-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1A | 58354979 | 58359152 | - | CQ.Regalona.r1.1AG0021820 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.94 | 15,808.61 Da | 44.62 | 86.59 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 82 | 125 | 3.4E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 82 | 131 | 2.83E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 36 | 130 | 1.6E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 83 | 124 | 2.4E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 83 | 125 | 12.740079 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G28040.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021756568.1 | RING-H2 finger protein ATL20-like [Chenopodium quinoa] | 0 |
| Q9C7E9 | RING-H2 finger protein ATL20 OS=Arabidopsis thaliana OX=3702 GN=ATL20 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803LIU4 | S ribonuclease OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg55313 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14352 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1AG0021820 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10009637m.g.v1.0 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0033s00012.v1.0 |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_016725, gene-QYE76_027791, gene-QYE76_027792 ... |
| Poaceae | Oryza coarctata | 1 | Oco12G002140 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g05200.1 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0402251 |
| Poaceae | Thinopyrum elongatum | 5 | Tel3E01G225000, Tel3E01G226000, Tel3E01G226400 ... |
| Poaceae | Triticum aestivum | 15 | TraesCS3A02G309200.1.cds1, TraesCS3A02G309300.1.cds1 ... |