Basic Information
Locus ID:
CQ.Regalona.r1.1AG0021790
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
E3 ubiquitin-protein ligase ATL23-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1A | 58231122 | 58231505 | + | CQ.Regalona.r1.1AG0021790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.17 | 13,780.08 Da | 40.53 | 94.41 | 0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 67 | 111 | 3.9E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 53 | 116 | 1.59E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 33 | 116 | 1.2E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 69 | 110 | 1.4E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 69 | 111 | 11.736875 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42200.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_024994585.1 | E3 ubiquitin-protein ligase ATL23 [Cynara cardunculus var. scolymus] | 0 |
| Q8L9W3 | E3 ubiquitin-protein ligase ATL23 OS=Arabidopsis thaliana OX=3702 GN=ATL23 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803MWX1 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology