Basic Information
Locus ID:
CQ.Regalona.r1.1AG0015170
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Zinc finger BED domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1A | 18627714 | 18630613 | - | CQ.Regalona.r1.1AG0015170 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.13 | 53,158.11 Da | 38.15 | 75.72 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14372 | Domain of unknown function (DUF4413) | 314 | 414 | 1.2E-27 | IPR025525 |
| Pfam | PF00069 | Protein kinase domain | 1 | 83 | 1.2E-14 | IPR000719 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 233 | 410 | 2.88E-23 | IPR012337 |
| SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 140 | 192 | 8.57E-6 | IPR036236 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1 | 82 | 3.24E-18 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 144 | 1.1E-15 | - |
| SMART | SM00614 | bed5 | 137 | 190 | 7.0E-14 | - |
| ProSiteProfiles | PS50808 | Zinc finger BED-type profile. | 137 | 195 | 10.508511 | IPR003656 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 243 | 16.174255 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 86 | 128 | - | - |
| Coils | Coil | Coil | 336 | 356 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G42170.2 | - | 0 |
| RefSeq | XP_021739161.1 | zinc finger BED domain-containing protein RICESLEEPER 1-like [Chenopodium quinoa] | 0 |
| P08770 | Putative AC transposase OS=Zea mays OX=4577 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803L9M8 | BED-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 4 | gene_18523, gene_18908, gene_24739, gene_757 |
| Amaranthaceae | Atriplex hortensis | 4 | Ah002403, Ah025340, Ah025341, Ah035896 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_6g136250, BVRB_7g170450 |
| Amaranthaceae | Salicornia bigelovii | 7 | Sbi_jg16564, Sbi_jg23483, Sbi_jg33887, Sbi_jg40651 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg14931, Seu_jg27982 |
| Amaranthaceae | Suaeda glauca | 8 | Sgl18348, Sgl25401, Sgl30582, Sgl30712, Sgl32903, Sgl38164 ... |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000006175, gene:ENSEOMG00000019503 |
| Amaranthaceae | Chenopodium quinoa | 30 | CQ.Regalona.r1.1AG0015170, CQ.Regalona.r1.1BG0000790 ... |
| Plantaginaceae | Plantago ovata | 1 | Pov_00009065 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G16891 |
| Zosteraceae | Zostera marina | 2 | Zosma04g10920.v3.1, Zosma04g21000.v3.1 |