Basic Information
Locus ID:
CQ.Regalona.r1.1AG0010600
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Short Name:
UBP16
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1A | 11396697 | 11407019 | - | CQ.Regalona.r1.1AG0010600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.52 | 121,207.67 Da | 51.05 | 71.84 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 551 | 861 | 1.24167E-129 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 552 | 860 | 4.5E-43 | IPR001394 |
| Pfam | PF01753 | MYND finger | 78 | 115 | 2.0E-9 | IPR002893 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 548 | 865 | 1.26E-81 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 74 | 117 | 9.59E-12 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 66 | 121 | 1.7E-12 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 545 | 872 | 2.3E-88 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 552 | 863 | 48.328873 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 78 | 115 | 11.44711 | IPR002893 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 78 | 115 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 553 | 568 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 987 | 1025 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 894 | 923 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 294 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1076 | 1106 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 987 | 1049 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 255 | 294 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_021743660.1 | ubiquitin carboxyl-terminal hydrolase 16-like [Chenopodium quinoa] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LUZ4 | Ubiquitin carboxyl-terminal hydrolase 16-like OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology