Basic Information
Locus ID:
CQ.Regalona.r1.1AG0010570
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Endochitinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1A | 11361744 | 11363954 | + | CQ.Regalona.r1.1AG0010570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.37 | 32,436.07 Da | 34.91 | 59.09 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00325 | chitinase_GH19 | 82 | 299 | 2.61829E-97 | - |
| CDD | cd06921 | ChtBD1_GH19_hevein | 22 | 60 | 3.17403E-17 | - |
| Pfam | PF00182 | Chitinase class I | 81 | 299 | 3.7E-114 | IPR000726 |
| Pfam | PF00187 | Chitin recognition protein | 23 | 60 | 5.9E-14 | IPR001002 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 23 | 69 | 1.57E-13 | IPR036861 |
| SUPERFAMILY | SSF53955 | Lysozyme-like | 77 | 305 | 5.06E-95 | IPR023346 |
| Gene3D | G3DSA:3.30.20.10 | Endochitinase, domain 2 | 164 | 208 | 7.0E-105 | - |
| Gene3D | G3DSA:3.30.60.10 | - | 21 | 62 | 1.7E-17 | IPR036861 |
| Gene3D | G3DSA:1.10.530.10 | - | 86 | 305 | 7.0E-105 | - |
| SMART | SM00270 | ChitinBD_3 | 23 | 60 | 2.2E-17 | IPR001002 |
| PIRSF | PIRSF001060 | Endochitinase | 1 | 306 | 1.1E-108 | IPR016283 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 21 | 62 | 11.035005 | IPR001002 |
| ProSitePatterns | PS00774 | Chitinases family 19 signature 2. | 212 | 222 | - | IPR000726 |
| ProSitePatterns | PS00773 | Chitinases family 19 signature 1. | 99 | 121 | - | IPR000726 |
| ProSitePatterns | PS00026 | Chitin recognition or binding domain signature. | 33 | 52 | - | IPR018371 |
| PRINTS | PR00451 | Chitin-binding domain signature | 31 | 39 | 2.1E-6 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 46 | 53 | 2.1E-6 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 39 | 46 | 2.1E-6 | IPR001002 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12500.1 | basic chitinase. encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. | 0 |
| RefSeq | XP_021743665.1 | basic endochitinase-like [Chenopodium quinoa] | 0 |
| P51613 | Basic endochitinase OS=Vitis vinifera OX=29760 GN=CHIT1B PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LUZ6 | Chitin-binding type-1 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology