Basic Information
Locus ID:
CQ.Regalona.r1.1AG0010260
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1A | 10986347 | 10998475 | - | CQ.Regalona.r1.1AG0010260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.07 | 37,627.64 Da | 38.21 | 88.54 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 64 | 107 | 4.0E-11 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 55 | 141 | 9.68E-19 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 47 | 143 | 2.3E-12 | - |
| SMART | SM00256 | fbox_2 | 65 | 105 | 3.8E-10 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 59 | 105 | 11.060639 | IPR001810 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21760.1 | F-box protein 7. This gene is predicted to encode an F-box protein that is evolutionarily conserved between Arabidopsis and other eukaryotes including S.cerevisiae and humans. It may play a role in regulating translation under conditions of temperature stress. FBP7 transcript levels are increased at high and low temperatures. | 0 |
| RefSeq | XP_021743707.1 | F-box protein 7-like isoform X1 [Chenopodium quinoa] | 0 |
| Q9XI00 | F-box protein 7 OS=Arabidopsis thaliana OX=3702 GN=SKIP32 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LV27 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg12087 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23006 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023667 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g109510 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4219, Sbi_jg49584 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5657 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000997 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl10616, Sgl15869 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014347, gene:ENSEOMG00000034019 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1AG0010260 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30039660 |
| Apiaceae | Apium graveolens | 1 | Ag3G01075 |
| Arecaceae | Cocos nucifera | 1 | COCNU_15G002180 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103701268 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.957.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri16G30484, FtriNA05041, FtriNA11569 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G21760.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10008543m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g19320.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g036590.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1800 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1974 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g07680 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0276s00016.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g13770 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.877 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00027557, Pov_00037824 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G23066 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.1021, BH09.1095, CH09.1230 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0317380, gene-QOZ80_4BG0348710 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0168640.1 |
| Poaceae | Oryza coarctata | 1 | Oco07G006000 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g35190.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_06G096700, gene-BS78_06G098100 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0302676, Pt_Chr0302710, Pt_Chr0302712, Pt_Chr0302715 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G012960, Chr25G011250, Chr26G006610, Chr30G010830 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G535400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG044010, gene_TRIDC2BG046710 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G303500.1, TraesCS2B02G320100.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb082740_P001, Zm00001eb422580_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-7665 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g21287 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.764, evm.TU.LG04.19 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc05g20050, gene.Posoc05g20100, gene.Posoc05g20120 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1111 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-18735 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5573 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13103 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.433 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011692 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8129 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9827 |
| Salicaceae | Populus euphratica | 2 | populus_peu14742, populus_peu32421 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627002 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002852 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3242 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G2233 |
| Zosteraceae | Zostera marina | 1 | Zosma05g11670.v3.1 |