Basic Information
Locus ID:
CQ.Regalona.r1.1AG0009770
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1A | 10433846 | 10441795 | + | CQ.Regalona.r1.1AG0009770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.34 | 101,564.14 Da | 30.52 | 71.17 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10320 | RGL4_N | 269 | 564 | 8.23124E-61 | - |
| CDD | cd10316 | RGL4_M | 597 | 694 | 1.59703E-24 | IPR029413 |
| CDD | cd10317 | RGL4_C | 708 | 894 | 9.11851E-52 | - |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 621 | 691 | 1.7E-18 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 270 | 466 | 3.6E-72 | IPR010325 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 706 | 893 | 1.4E-51 | IPR029411 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 703 | 894 | 1.19E-45 | IPR008979 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 616 | 694 | 4.9E-7 | IPR013784 |
| Gene3D | G3DSA:2.60.120.260 | - | 704 | 894 | 1.0E-16 | - |
| Gene3D | G3DSA:2.60.40.1120 | - | 616 | 694 | 1.9E-6 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 269 | 565 | 2.2E-10 | IPR014718 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 212 | 267 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 218 | 232 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09890.4 | - | 0 |
| RefSeq | XP_021743766.1 | probable rhamnogalacturonate lyase B [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803LV70 | Rhamnogalacturonan endolyase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology