Basic Information
Locus ID:
CQ.Regalona.r1.1AG0009730
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1A | 10383967 | 10397253 | + | CQ.Regalona.r1.1AG0009730 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.99 | 93,331.29 Da | 28.63 | 74.13 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10320 | RGL4_N | 29 | 308 | 9.66527E-68 | - |
| CDD | cd10317 | RGL4_C | 627 | 812 | 1.61883E-48 | - |
| CDD | cd10316 | RGL4_M | 348 | 447 | 4.65396E-32 | IPR029413 |
| CDD | cd10316 | RGL4_M | 532 | 615 | 2.36005E-30 | IPR029413 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 371 | 442 | 1.2E-23 | IPR029413 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 539 | 611 | 1.8E-26 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 22 | 217 | 6.6E-87 | IPR010325 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 626 | 810 | 3.8E-53 | IPR029411 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 457 | 534 | 2.7E-19 | IPR029411 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 454 | 534 | 1.11E-14 | IPR008979 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 622 | 812 | 1.87E-44 | IPR008979 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 39 | 308 | 2.67E-5 | IPR011013 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 346 | 442 | 1.14E-8 | IPR013784 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 557 | 613 | 1.37E-9 | IPR013784 |
| Gene3D | G3DSA:2.60.120.260 | - | 624 | 813 | 8.2E-18 | - |
| Gene3D | G3DSA:2.60.40.1120 | - | 345 | 444 | 5.9E-8 | - |
| Gene3D | G3DSA:2.60.40.1120 | - | 533 | 612 | 1.5E-9 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 23 | 290 | 3.2E-9 | IPR014718 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09890.4 | - | 0 |
| RefSeq | XP_021759798.1 | rhamnogalacturonate lyase B-like [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803LV74 | rhamnogalacturonan endolyase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology