Basic Information
Locus ID:
CQ.Regalona.r1.1AG0009720
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1A | 10354418 | 10367574 | + | CQ.Regalona.r1.1AG0009720 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.79 | 145,263.95 Da | 32.53 | 72.24 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10320 | RGL4_N | 638 | 930 | 1.72052E-64 | - |
| CDD | cd10316 | RGL4_M | 334 | 433 | 1.01067E-29 | IPR029413 |
| CDD | cd10317 | RGL4_C | 1074 | 1260 | 1.4128E-54 | - |
| CDD | cd10317 | RGL4_C | 445 | 622 | 1.16192E-58 | - |
| CDD | cd10316 | RGL4_M | 964 | 1046 | 9.39171E-25 | IPR029413 |
| CDD | cd10320 | RGL4_N | 8 | 300 | 8.92228E-64 | - |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 987 | 1044 | 3.0E-16 | IPR029413 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 357 | 428 | 5.0E-21 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 634 | 833 | 7.2E-81 | IPR010325 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 1072 | 1259 | 2.5E-55 | IPR029411 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 6 | 203 | 1.4E-84 | IPR010325 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 443 | 621 | 1.6E-57 | IPR029411 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 9 | 291 | 4.39E-8 | IPR011013 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 1069 | 1260 | 1.7E-50 | IPR008979 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 962 | 1044 | 1.28E-8 | IPR013784 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 639 | 903 | 5.81E-7 | IPR011013 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 440 | 622 | 5.1E-50 | IPR008979 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 333 | 426 | 1.35E-9 | IPR013784 |
| Gene3D | G3DSA:2.60.120.260 | - | 1070 | 1260 | 5.4E-21 | - |
| Gene3D | G3DSA:2.60.120.260 | - | 441 | 622 | 1.1E-21 | - |
| Gene3D | G3DSA:2.60.40.1120 | - | 332 | 428 | 1.6E-8 | - |
| Gene3D | G3DSA:2.60.40.1120 | - | 962 | 1048 | 1.2E-7 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 635 | 915 | 3.6E-11 | IPR014718 |
| Gene3D | G3DSA:2.70.98.10 | - | 5 | 282 | 4.1E-11 | IPR014718 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24430.1 | Rhamnogalacturonate lyase family protein. | 0 |
| RefSeq | XP_011016984.1 | PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105120478 [Populus euphratica] | 0 |
| TrEMBL | A0A803LV76 | rhamnogalacturonan endolyase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology