halophFGD

Basic Information

Locus ID: CQ.Regalona.r1.1AG0008880

Species & Taxonomic ID: Chenopodium quinoa & 63459

Genome Assembly: GCA_040571445.1

Description: Pentatricopeptide repeat-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1A	9401954	9418866	-	CQ.Regalona.r1.1AG0008880

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.55	229,940.67 Da	42.39	80.61	-0.27

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd09612	Jacalin	378	506	7.57147E-39	IPR033734
CDD	cd09612	Jacalin	208	339	7.07929E-45	IPR033734
CDD	cd09612	Jacalin	1742	1855	1.50944E-32	IPR033734
CDD	cd09612	Jacalin	1921	2049	9.41669E-40	IPR033734
CDD	cd09612	Jacalin	1503	1633	1.36347E-47	IPR033734
CDD	cd20251	Complex1_LYR_SF	16	73	1.20633E-18	-
Pfam	PF13041	PPR repeat family	1193	1241	7.7E-9	IPR002885
Pfam	PF01419	Jacalin-like lectin domain	378	506	1.5E-27	IPR001229
Pfam	PF01419	Jacalin-like lectin domain	633	679	2.8E-6	IPR001229
Pfam	PF01419	Jacalin-like lectin domain	1742	1855	1.2E-17	IPR001229
Pfam	PF01419	Jacalin-like lectin domain	1918	2049	7.7E-32	IPR001229
Pfam	PF01419	Jacalin-like lectin domain	208	339	8.6E-33	IPR001229
Pfam	PF13041	PPR repeat family	1021	1060	2.3E-9	IPR002885
Pfam	PF01535	PPR repeat	747	771	0.0048	IPR002885
Pfam	PF01535	PPR repeat	1269	1293	0.11	IPR002885
Pfam	PF13041	PPR repeat family	920	968	7.0E-11	IPR002885
Pfam	PF13041	PPR repeat family	851	897	1.3E-12	IPR002885
Pfam	PF13041	PPR repeat family	1092	1139	9.5E-9	IPR002885
Pfam	PF01419	Jacalin-like lectin domain	1503	1634	1.9E-32	IPR001229
Pfam	PF05347	Complex 1 protein (LYR family)	16	67	1.1E-9	IPR008011
SUPERFAMILY	SSF51101	Mannose-binding lectins	197	338	1.57E-41	IPR036404
SUPERFAMILY	SSF51101	Mannose-binding lectins	368	506	3.79E-35	IPR036404
SUPERFAMILY	SSF51101	Mannose-binding lectins	624	683	5.76E-13	IPR036404
SUPERFAMILY	SSF51101	Mannose-binding lectins	1493	1634	1.83E-41	IPR036404
SUPERFAMILY	SSF51101	Mannose-binding lectins	1907	2048	6.15E-42	IPR036404
SUPERFAMILY	SSF51101	Mannose-binding lectins	1730	1854	1.57E-31	IPR036404
Gene3D	G3DSA:2.100.10.30	-	620	713	3.9E-16	IPR036404
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	933	1085	1.5E-42	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	1086	1150	7.3E-8	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	1151	1243	9.6E-18	IPR011990
Gene3D	G3DSA:2.100.10.30	-	185	339	1.2E-49	IPR036404
Gene3D	G3DSA:2.100.10.30	-	1723	1855	2.2E-34	IPR036404
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	738	792	2.5E-9	IPR011990
Gene3D	G3DSA:2.100.10.30	-	1898	2049	7.9E-54	IPR036404
Gene3D	G3DSA:2.100.10.30	-	1480	1632	5.4E-54	IPR036404
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	793	900	6.2E-24	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	1244	1342	3.4E-11	IPR011990
Gene3D	G3DSA:2.100.10.30	-	359	506	3.2E-44	IPR036404
SMART	SM00915	Jacalin_2	378	508	5.7E-36	IPR001229
SMART	SM00915	Jacalin_2	1742	1856	5.3E-27	IPR001229
SMART	SM00915	Jacalin_2	208	340	5.9E-38	IPR001229
SMART	SM00915	Jacalin_2	1918	2050	2.3E-45	IPR001229
SMART	SM00915	Jacalin_2	1503	1634	9.2E-41	IPR001229
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	996	1023	2.0E-5	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	853	886	4.1E-7	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	1096	1128	9.2E-7	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	888	922	2.3E-6	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	1024	1058	1.3E-7	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	746	772	0.0021	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	1059	1093	4.2E-7	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	823	853	0.0018	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	1196	1229	4.8E-7	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	923	957	1.5E-8	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	1093	1127	12.265752	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	1194	1228	11.805378	IPR002885
ProSiteProfiles	PS51752	Jacalin-type lectin domain profile.	622	675	11.309258	IPR001229
ProSiteProfiles	PS51752	Jacalin-type lectin domain profile.	1731	1856	33.744305	IPR001229
ProSiteProfiles	PS51752	Jacalin-type lectin domain profile.	1907	2050	51.874294	IPR001229
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	1057	1091	12.024604	IPR002885
ProSiteProfiles	PS51752	Jacalin-type lectin domain profile.	1492	1634	49.388805	IPR001229
ProSiteProfiles	PS51752	Jacalin-type lectin domain profile.	197	340	48.160133	IPR001229
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	1022	1056	12.594591	IPR002885
ProSiteProfiles	PS51752	Jacalin-type lectin domain profile.	367	508	44.427212	IPR001229
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	921	955	13.033043	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	851	885	13.438611	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	886	920	11.629997	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	991	1021	9.152743	IPR002885
MobiDBLite	mobidb-lite	consensus disorder prediction	1692	1707	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1683	1714	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding) GO:0030246 (carbohydrate binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G19715.1	Mannose-binding lectin superfamily protein.
RefSeq	XP_021759624.1	uncharacterized protein LOC110724509 [Chenopodium quinoa]
Swiss-Prot	F4HQX1	Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1
TrEMBL	A0A803MSI1	Complex 1 LYR protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg10582, jg13569, jg22875, jg27248
Aizoaceae	Mesembryanthemum crystallinum	2	gene_23077, gene_23079
Amaranthaceae	Atriplex hortensis	2	Ah011355, Ah023472
Amaranthaceae	Beta vulgaris	4	BVRB_1g006640, BVRB_1g006650, BVRB_1g006670, BVRB_9g211560
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg28803, Sbi_jg3146, Sbi_jg3153, Sbi_jg39146
Amaranthaceae	Salicornia europaea	2	Seu_jg11011, Seu_jg6762
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00000023, GOSA_00009615, GOSA_00014151
Amaranthaceae	Suaeda glauca	9	Sgl11510, Sgl11514, Sgl11516, Sgl11596, Sgl11600, Sgl16965 ... Sgl16968, Sgl17093, Sgl17097
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000013345, gene:ENSEOMG00000013653 ... gene:ENSEOMG00000015107, gene:ENSEOMG00000033716, gene:ENSEOMG00000035061, gene:ENSEOMG00000039654, gene:ENSEOMG00000047367, gene:ENSEOMG00000049597, gene:ENSEOMG00000052705
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.1AG0008880, CQ.Regalona.r1.1BG0016950 ... CQ.Regalona.r1.1BG0016970, CQ.Regalona.r1.7AG0015310, CQ.Regalona.r1.9BG0011020
Anacardiaceae	Pistacia vera	1	pistato.v30116130
Apiaceae	Apium graveolens	4	Ag1G00379, Ag2G02820, Ag4G02274, Ag6G01416
Arecaceae	Cocos nucifera	2	COCNU_06G013050, COCNU_06G013120
Arecaceae	Phoenix dactylifera	2	gene-LOC103717797, gene-LOC103719297
Asparagaceae	Asparagus officinalis	3	AsparagusV1_03.2115.V1.1, AsparagusV1_05.2895.V1.1 ... AsparagusV1_08.2928.V1.1
Asteraceae	Flaveria trinervia	6	Ftri10G02662, Ftri10G07324, Ftri10G25229, Ftri10G27720 ... Ftri10G32015, Ftri18G05095
Brassicaceae	Arabidopsis thaliana	2	AT1G19715.3, AT1G73040.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10007145m.g.v1.0, Thhalv10019210m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g17550.v2.2, Sp5g28000.v2.2
Brassicaceae	Brassica nigra	3	BniB03g008330.2N, BniB04g034420.2N, BniB05g070250.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq02G0901, Ceq03G0975
Casuarinaceae	Casuarina glauca	2	Cgl02G0914, Cgl03G1061
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno10g09320, gene.Cymno16g03180
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate01g03190, gene.Thate01g03210, gene.Thate09g07520
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-1340
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.13, evm.TU.LG06.628
Plantaginaceae	Plantago ovata	1	Pov_00015244
Plumbaginaceae	Limonium bicolor	12	Lb0G36806, Lb0G37360, Lb0G38063, Lb0G38278, Lb0G38317 ... Lb1G00549, Lb1G00551, Lb1G00554, Lb1G02726, Lb2G09419, Lb7G34303, Lb8G35786
Poaceae	Echinochloa crus-galli	9	AH02.3457, AH05.1812, AH08.2131, BH02.3499, BH05.1978 ... CH02.3041, CH02.3531, CH05.2044, CH08.2422
Poaceae	Eleusine coracana subsp. coracana	7	gene-QOZ80_1AG0035380, gene-QOZ80_1BG0080450 ... gene-QOZ80_1BG0085430, gene-QOZ80_5AG0364930, gene-QOZ80_5AG0367290, gene-QOZ80_5BG0412790, gene-QOZ80_5BG0415010
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.1HG0076420.1, HORVU.MOREX.r3.1HG0080180.1 ... HORVU.MOREX.r3.3HG0223290.1, HORVU.MOREX.r3.3HG0292920.1, HORVU.MOREX.r3.7HG0682630.1
Poaceae	Lolium multiflorum	14	gene-QYE76_000100, gene-QYE76_014812, gene-QYE76_016264 ... gene-QYE76_017484, gene-QYE76_024985, gene-QYE76_030195, gene-QYE76_048484, gene-QYE76_048486, gene-QYE76_049155, gene-QYE76_049156, gene-QYE76_049165, gene-QYE76_049168, gene-QYE76_049169, gene-QYE76_049171
Poaceae	Oryza coarctata	7	Oco02G018700, Oco02G022290, Oco09G013680, Oco09G015600 ... Oco10G013760, Oco10G015470, Oco15G010450
Poaceae	Oryza sativa	2	LOC_Os01g51050.1, LOC_Os05g43240.1
Poaceae	Paspalum vaginatum	5	gene-BS78_03G250500, gene-BS78_03G294300, gene-BS78_K113200 ... gene-BS78_09G195900, gene-BS78_09G219000
Poaceae	Puccinellia tenuiflora	12	Pt_Chr0205493, Pt_Chr0205497, Pt_Chr0206968, Pt_Chr0206969 ... Pt_Chr0403695, Pt_Chr0503873, Pt_Chr0503896, Pt_Chr0504260, Pt_Chr0504311, Pt_Chr0601571, Pt_Chr0601601, Pt_Chr0700174
Poaceae	Sporobolus alterniflorus	11	Chr01G014880, Chr02G008190, Chr02G011660, Chr05G025350 ... Chr12G022010, Chr18G013400, Chr18G015100, Chr20G001510, Chr22G002450, Chr22G004290, Chr29G001880
Poaceae	Thinopyrum elongatum	4	Tel1E01G530900, Tel1E01G591000, Tel3E01G506800 ... Tel7E01G451800
Poaceae	Triticum dicoccoides	6	gene_TRIDC1AG048350, gene_TRIDC1BG054910 ... gene_TRIDC1BG061170, gene_TRIDC3AG045650, gene_TRIDC3BG023590, gene_TRIDC3BG051780
Poaceae	Triticum aestivum	23	TraesCS1A02G325500.1, TraesCS1A02G363600.1 ... TraesCS1B02G338600.1, TraesCS1B02G380700.1, TraesCS1D02G327100.1, TraesCS1D02G367900.1, TraesCS1D02G368600.1, TraesCS3A02G131600.1, TraesCS3A02G321000.1, TraesCS3B02G031800.1, TraesCS3B02G032600.1, TraesCS3B02G052500.1, TraesCS3B02G053100.1, TraesCS3B02G165200.1, TraesCS3B02G344800.1, TraesCS3D02G028700.1, TraesCS3D02G029200.1, TraesCS3D02G310300.1, TraesCS6A02G105700.1, TraesCS6B02G135000.1, TraesCS7A02G256100.1, TraesCS7B02G152700.1, TraesCS7D02G254500.1
Poaceae	Zea mays	4	Zm00001eb292320_P001, Zm00001eb342390_P002 ... Zm00001eb362900_P001, Zm00001eb369990_P001
Poaceae	Zoysia japonica	5	nbis-gene-11766, nbis-gene-11767, nbis-gene-12697 ... nbis-gene-14375, nbis-gene-24999
Poaceae	Zoysia macrostachya	5	Zma_g24404, Zma_g26906, Zma_g28703, Zma_g8504, Zma_g8764
Portulacaceae	Portulaca oleracea	4	evm.TU.LG04.1672, evm.TU.LG10.1158, evm.TU.LG19.563 ... evm.TU.LG24.25
Posidoniaceae	Posidonia oceanica	3	gene.Posoc03g11420, gene.Posoc04g19300, gene.Posoc09g05680
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_8_RagTag.1285, evm.TU.Scaffold_8_RagTag.1286
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-9058, nbisL1-mrna-9061, nbisL1-mrna-9062
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-19028
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-15363
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000018l.421
Rhizophoraceae	Kandelia obovata	1	Maker00002978
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-13340, nbisL1-mrna-13341
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-11138, nbisL1-mrna-11139
Salicaceae	Populus euphratica	6	populus_peu15272, populus_peu15273, populus_peu23891 ... populus_peu23895, populus_peu30628, populus_peu32931
Solanaceae	Lycium barbarum	5	gene-LOC132611111, gene-LOC132620346, gene-LOC132623605 ... gene-LOC132629141, gene-LOC132633440
Solanaceae	Solanum chilense	4	SOLCI001343200, SOLCI001343300, SOLCI001819000 ... SOLCI003839100
Solanaceae	Solanum pennellii	4	gene-LOC107002166, gene-LOC107014445, gene-LOC107016210 ... gene-LOC107017061
Tamaricaceae	Reaumuria soongarica	9	STRG.18917_chr07_-, STRG.18921_chr07_-, STRG.18923_chr07_- ... gene_10845, gene_10846, gene_155, gene_1697, gene_4839, gene_6767
Tamaricaceae	Tamarix chinensis	5	TC04G1639, TC08G1814, TC08G1816, TC08G1817, TC08G1820
Zosteraceae	Zostera marina	1	Zosma05g12300.v3.1