Basic Information
Locus ID:
CQ.Regalona.r1.1AG0008180
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Sec12-like protein 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1A | 8692451 | 8696436 | - | CQ.Regalona.r1.1AG0008180 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 41,847.99 Da | 30.39 | 88.59 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 146 | 225 | 1.9E-6 | IPR024977 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 73 | 342 | 1.3E-32 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 8 | 349 | 3.5E-66 | IPR015943 |
| SMART | SM00320 | WD40_4 | 304 | 343 | 1.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 129 | 167 | 0.019 | IPR001680 |
| SMART | SM00320 | WD40_4 | 261 | 300 | 33.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 174 | 209 | 0.72 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 184 | 218 | 8.904377 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50550.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_021735541.1 | SEC12-like protein 2 [Chenopodium quinoa] | 0 |
| Q39221 | SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 | 0 | |
| TrEMBL | A0A803M4G0 | ANAPC4_WD40 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology