Basic Information
Locus ID:
CQ.Regalona.r1.1AG0007980
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1A | 8476431 | 8484841 | + | CQ.Regalona.r1.1AG0007980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.51 | 167,545.09 Da | 38.38 | 105.17 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 628 | 827 | 3.39091E-107 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 935 | 1229 | 3.80284E-90 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1252 | 1472 | 4.15533E-122 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 314 | 602 | 5.50387E-100 | IPR044746 |
| Pfam | PF00664 | ABC transporter transmembrane region | 316 | 581 | 1.0E-28 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1271 | 1419 | 8.7E-26 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 947 | 1181 | 3.0E-32 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 646 | 780 | 1.1E-18 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 308 | 610 | 2.49E-37 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 624 | 844 | 3.13E-56 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1246 | 1484 | 1.09E-64 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 934 | 1234 | 1.28E-48 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 898 | 1235 | 1.5E-54 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 280 | 611 | 1.4E-53 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1237 | 1490 | 2.7E-78 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 623 | 854 | 4.6E-69 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1280 | 1472 | 7.5E-9 | IPR003593 |
| SMART | SM00382 | AAA_5 | 655 | 828 | 6.1E-12 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1254 | 1488 | 15.793127 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 316 | 594 | 37.126736 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 937 | 1217 | 32.612812 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 628 | 851 | 21.775488 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 753 | 767 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 867 | 905 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 867 | 884 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 885 | 905 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60160.1 | multidrug resistance-associated protein 9. member of MRP subfamily | 0 |
| RefSeq | XP_021756470.1 | putative ABC transporter C family member 15 [Chenopodium quinoa] | 0 |
| Q9M1C7 | ABC transporter C family member 9 OS=Arabidopsis thaliana OX=3702 GN=ABCC9 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803LIL0 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology