Basic Information
Locus ID:
CQ.Regalona.r1.1AG0006080
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
fasciclin-like arabinogalactan protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1A | 6474087 | 6476079 | - | CQ.Regalona.r1.1AG0006080 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.92 | 42,053.94 Da | 50.11 | 96.37 | 0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 30 | 105 | 5.0E-5 | IPR000782 |
| Pfam | PF02469 | Fasciclin domain | 188 | 317 | 6.7E-18 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 176 | 317 | 6.8E-22 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 24 | 167 | 1.83E-16 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 168 | 317 | 2.9E-14 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 18 | 161 | 3.3E-11 | IPR036378 |
| SMART | SM00554 | fasc_3 | 214 | 318 | 2.8E-15 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 176 | 315 | 17.153559 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 18 | 165 | 10.519999 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 325 | 386 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 348 | 362 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 329 | 347 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60900.1 | FASCICLIN-like arabinogalactan-protein 10. | 0 |
| RefSeq | XP_021756231.1 | fasciclin-like arabinogalactan protein 10 [Chenopodium quinoa] | 0 |
| Q9LZX4 | Fasciclin-like arabinogalactan protein 10 OS=Arabidopsis thaliana OX=3702 GN=FLA10 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LI17 | Fasciclin-like arabinogalactan protein 8 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology