Basic Information
Locus ID:
CQ.Regalona.r1.1AG0004340
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1A | 4629393 | 4634049 | - | CQ.Regalona.r1.1AG0004340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.44 | 137,405.44 Da | 35.98 | 108.25 | 0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 152 | 410 | 9.36109E-63 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 738 | 997 | 1.5809E-61 | IPR044726 |
| CDD | cd03250 | ABCC_MRP_domain1 | 440 | 640 | 8.61237E-109 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1071 | 1236 | 7.11972E-91 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 250 | 390 | 2.2E-7 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 740 | 887 | 5.5E-18 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1074 | 1221 | 2.5E-28 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 458 | 592 | 3.5E-20 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 725 | 995 | 3.4E-35 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 437 | 660 | 8.32E-57 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 139 | 410 | 1.26E-14 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1063 | 1235 | 9.08E-48 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1008 | 1236 | 3.2E-56 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 422 | 678 | 5.8E-75 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 127 | 421 | 1.4E-26 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 700 | 1004 | 3.7E-39 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1082 | 1236 | 0.16 | IPR003593 |
| SMART | SM00382 | AAA_5 | 467 | 648 | 9.8E-13 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 740 | 895 | 21.786242 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 248 | 403 | 16.300703 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 442 | 663 | 23.149364 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 565 | 579 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 682 | 712 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021736749.1 | ABC transporter C family member 3-like [Chenopodium quinoa] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803M394 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology