Basic Information
Locus ID:
CQ.Regalona.r1.1AG0002100
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1A | 2257786 | 2260014 | - | CQ.Regalona.r1.1AG0002100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.09 | 41,741.98 Da | 54.07 | 80.21 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 322 | 364 | 1.55224E-15 | - |
| Pfam | PF14380 | Wall-associated receptor kinase C-terminal | 155 | 223 | 6.7E-7 | IPR032872 |
| Pfam | PF13639 | Ring finger domain | 321 | 364 | 8.0E-13 | IPR001841 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 26 | 93 | 1.8E-14 | IPR025287 |
| SUPERFAMILY | SSF57850 | RING/U-box | 316 | 367 | 2.78E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 282 | 369 | 4.4E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 322 | 363 | 5.0E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 322 | 364 | 12.1057 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25410.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021760307.1 | putative RING-H2 finger protein ATL21A [Chenopodium quinoa] | 0 |
| Q9SKK8 | RING-H2 finger protein ATL22 OS=Arabidopsis thaliana OX=3702 GN=ATL22 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803M4U4 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology