Basic Information
Locus ID:
CQ.Regalona.r1.1AG0000890
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Leucine-rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1A | 942391 | 950229 | - | CQ.Regalona.r1.1AG0000890 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.44 | 162,013.92 Da | 37.18 | 107.24 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 583 | 599 | 1.9 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 905 | 923 | 0.43 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 975 | 997 | 1.9 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 430 | 452 | 0.42 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 1047 | 1069 | 0.42 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 786 | 845 | 7.5E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 193 | 252 | 1.5E-8 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 1302 | 1466 | 2.3E-9 | IPR000719 |
| Pfam | PF00560 | Leucine Rich Repeat | 358 | 380 | 1.9 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 288 | 306 | 0.43 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 28 | 64 | 4.1E-5 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 169 | 188 | 0.92 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 645 | 681 | 8.1E-5 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 905 | 1184 | 1.7E-50 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 667 | 942 | 5.95E-47 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 257 | 602 | 1.45E-50 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 52 | 327 | 8.84E-44 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1301 | 1465 | 2.75E-20 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1266 | 1370 | 4.8E-7 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1372 | 1478 | 8.3E-13 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 185 | 286 | 9.6E-28 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 802 | 902 | 1.4E-27 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 903 | 1210 | 9.9E-79 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 646 | 801 | 8.7E-28 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 287 | 627 | 5.6E-86 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 28 | 184 | 4.8E-28 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 288 | 309 | 320.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 310 | 333 | 370.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 92 | 115 | 8.1 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 404 | 428 | 120.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1021 | 1045 | 120.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 905 | 926 | 320.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 580 | 603 | 93.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 541 | 566 | 87.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 973 | 997 | 14.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 760 | 783 | 150.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 452 | 478 | 110.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 215 | 241 | 260.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 832 | 858 | 170.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 541 | 561 | 110.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 518 | 539 | 480.0 | - |
| SMART | SM00369 | LRR_typ_2 | 239 | 262 | 12.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 167 | 191 | 35.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 1069 | 1095 | 120.0 | - |
| SMART | SM00369 | LRR_typ_2 | 709 | 732 | 7.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 784 | 808 | 62.0 | IPR003591 |
| SMART | SM00364 | LRR_bac_2 | 973 | 993 | 240.0 | - |
| SMART | SM00364 | LRR_bac_2 | 709 | 728 | 88.0 | - |
| SMART | SM00364 | LRR_bac_2 | 452 | 472 | 450.0 | - |
| SMART | SM00364 | LRR_bac_2 | 1143 | 1161 | 410.0 | - |
| SMART | SM00364 | LRR_bac_2 | 856 | 876 | 96.0 | - |
| SMART | SM00364 | LRR_bac_2 | 92 | 112 | 170.0 | - |
| SMART | SM00364 | LRR_bac_2 | 1069 | 1089 | 450.0 | - |
| SMART | SM00364 | LRR_bac_2 | 356 | 376 | 240.0 | - |
| SMART | SM00369 | LRR_typ_2 | 856 | 879 | 5.3 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 452 | 476 | 21.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 518 | 540 | 9.6 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 356 | 380 | 14.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1141 | 1165 | 100.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1069 | 1093 | 21.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 1143 | 1165 | 7.088198 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 287 | 309 | 7.257614 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 520 | 541 | 7.165205 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1291 | 1485 | 13.474663 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 94 | 115 | 7.1113 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 904 | 926 | 7.257614 | IPR001611 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 288 | 301 | 4.2E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 541 | 554 | 4.2E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G34420.1 | leucine-rich repeat transmembrane protein kinase family protein. | 0 |
| RefSeq | XP_021760445.1 | leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 [Chenopodium quinoa] | 0 |
| O22938 | Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 OS=Arabidopsis thaliana OX=3702 GN=PXC3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803M551 | Protein kinase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg12176, jg12184, jg6496, jg6497, jg6499 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1539 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022651 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g000900, BVRB_1g000910 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000777 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl10676, Sgl16007 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000014842, gene:ENSEOMG00000033386 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0000890, CQ.Regalona.r1.2BG0028100 |
| Anacardiaceae | Pistacia vera | 5 | pistato.v30036320, pistato.v30036330, pistato.v30036350 ... |
| Apiaceae | Apium graveolens | 1 | Ag7G02334 |
| Arecaceae | Cocos nucifera | 4 | COCNU_02G011260, COCNU_02G011270, COCNU_15G003240 ... |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103701420, gene-LOC103707547, gene-LOC120113031 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.652.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G21224 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G34420.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006707m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g29610.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB07g015210.2N, BniB07g015330.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1555 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G1690, Cgl03G1691 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG06.1437, evm.TU.LG06.1443, evm.TU.LG06.1445 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00021811 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G12217 |
| Poaceae | Echinochloa crus-galli | 4 | AH05.358, BH05.416, CH05.474, CH05.729 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0383840, gene-QOZ80_5BG0430670 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0346810.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_002589 |
| Poaceae | Oryza coarctata | 3 | Oco22G003560, Oco22G003570, Oco23G003130 |
| Poaceae | Oryza sativa | 3 | LOC_Os11g09110.1, LOC_Os11g09130.1, LOC_Os12g08180.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G052300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0104098, Pt_Chr0703351 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr01G016750, Chr04G023480, Chr06G025290, Chr19G013010 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G218100, Tel5E01G666800 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4AG034170, gene_TRIDC4BG015650 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS4B02G101100.1.cds1, TraesCS4D02G097700.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb408490_P001, Zm00001eb408500_P001 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-25504, nbis-gene-25506, nbis-gene-51111 ... |
| Poaceae | Zoysia macrostachya | 2 | Zma_g17683, Zma_g24840 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG04.1992, evm.TU.LG06.341, evm.TU.LG19.1443 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g18610 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1302 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18459, nbisL1-mrna-18511 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13472 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13276 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.308 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012031 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8990 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18511 |
| Salicaceae | Populus euphratica | 2 | populus_peu16647, populus_peu18940 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627123 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002869 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1302 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2340 |