Basic Information
Locus ID:
COCNU_16G008160
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 36693606 | 36694754 | - | COCNU_16G008160 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.67 | 42,580.05 Da | 75.72 | 57.96 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 184 | 225 | 1.73192E-23 | - |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 256 | 363 | 2.4E-40 | IPR010543 |
| Pfam | PF14369 | zinc-ribbon | 4 | 34 | 3.4E-14 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 183 | 225 | 1.0E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 164 | 231 | 4.01E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 152 | 232 | 4.6E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 184 | 224 | 1.7E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 184 | 225 | 12.208971 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 338 | 359 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59550.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_010937587.1 | E3 ubiquitin-protein ligase RDUF1 [Elaeis guineensis] | 0 |
| Q940T5 | E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0NEV7 | RING-type E3 ubiquitin transferase OS=Cocos nucifera OX=13894 GN=COCNU_16G008160 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology