Basic Information
Locus ID:
COCNU_16G006340
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
E3 ubiquitin ligase BIG
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 32734630 | 32735427 | + | COCNU_16G006340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.34 | 29,701.55 Da | 64.34 | 66.15 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 186 | 228 | 3.7E-10 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 91 | 132 | 1.2E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 186 | 231 | 1.1E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 85 | 135 | 8.35E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 176 | 264 | 1.0E-10 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 54 | 138 | 4.1E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 92 | 132 | 0.0019 | IPR001841 |
| SMART | SM00184 | ring_2 | 187 | 228 | 0.0096 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 92 | 132 | 10.689412 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 187 | 228 | 10.645153 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 161 | 183 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 164 | 182 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18760.1 | Zinc finger, C3HC4 type (RING finger) family protein. | 0 |
| RefSeq | XP_038989093.1 | E3 ubiquitin-protein ligase RING1-like [Phoenix dactylifera] | 0 |
| TrEMBL | A0A8K0NDQ6 | RING-type domain-containing protein OS=Cocos nucifera OX=13894 GN=COCNU_16G006340 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 3 | COCNU_02G014250, COCNU_16G006120, COCNU_16G006340 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120112947 |