halophFGD

Basic Information

Locus ID: COCNU_16G006120

Species & Taxonomic ID: Cocos nucifera & 13894

Genome Assembly: GCA_008124465.1

Description: Ribonuclease H protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr16	32278790	32279863	-	COCNU_16G006120

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.65	40,565.77 Da	40.98	77.53	-0.26

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd06222	RNase_H_like	203	321	1.51559E-23	IPR044730
Pfam	PF13456	Reverse transcriptase-like	204	322	7.2E-22	IPR002156
Pfam	PF13639	Ring finger domain	112	153	1.1E-6	IPR001841
SUPERFAMILY	SSF53098	Ribonuclease H-like	200	331	2.78E-14	IPR012337
SUPERFAMILY	SSF57850	RING/U-box	106	156	5.65E-10	-
Gene3D	G3DSA:3.30.420.10	-	200	327	3.2E-17	IPR036397
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	72	158	4.7E-9	IPR013083
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	113	153	10.468117	IPR001841
ProSiteProfiles	PS50879	RNase H domain profile.	197	326	11.053042	IPR002156

Gene Ontology

Molecular Function:

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_029124163.1	uncharacterized protein LOC114914796 [Elaeis guineensis]	0
TrEMBL	A0A8K0J2I2	RING-type domain-containing protein OS=Cocos nucifera OX=13894 GN=COCNU_16G006120 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Arecaceae	Cocos nucifera	3	COCNU_02G014250, COCNU_16G006120, COCNU_16G006340
Arecaceae	Phoenix dactylifera	1	gene-LOC120112947