Basic Information
Locus ID:
COCNU_16G004140
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
heat shock
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 27641882 | 27642669 | - | COCNU_16G004140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.60 | 25,052.96 Da | 35.61 | 75.62 | -0.84 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00183 | Hsp90 protein | 80 | 205 | 2.1E-50 | IPR001404 |
| Pfam | PF00183 | Hsp90 protein | 5 | 80 | 4.1E-28 | IPR001404 |
| SUPERFAMILY | SSF54211 | Ribosomal protein S5 domain 2-like | 26 | 205 | 4.55E-53 | IPR020568 |
| Gene3D | G3DSA:3.30.230.80 | - | 81 | 138 | 3.5E-17 | - |
| Gene3D | G3DSA:3.40.50.11260 | - | 139 | 209 | 2.4E-25 | - |
| Gene3D | G3DSA:3.30.230.80 | - | 25 | 80 | 9.2E-20 | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Pathway:
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
map04217 (Necroptosis)
ko04612 (Antigen processing and presentation)
map04612 (Antigen processing and presentation)
map04621 (NOD-like receptor signaling pathway)
ko04626 (Plant-pathogen interaction)
map04626 (Plant-pathogen interaction)
map04657 (IL-17 signaling pathway)
map04659 (Th17 cell differentiation)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G56010.1 | heat shock protein 81-3. A member of heat shock protein 90 (HSP90) gene family. Expressed in all tissues and abundant in root apical meristem, pollen and tapetum. Expression is NOT heat-induced but induced by IAA and NaCl. Overexpression reduced tolerance to heat and conferred higher tolerance to calcium. | 0 |
| RefSeq | XP_028216724.1 | heat shock cognate protein 80-like [Glycine soja] | 0 |
| P36182 | Heat shock protein 82 (Fragment) OS=Nicotiana tabacum OX=4097 GN=HSP82 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0IY46 | Putative Heat shock protein 82 OS=Cocos nucifera OX=13894 GN=COCNU_16G004140 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology