Basic Information
Locus ID:
COCNU_16G004000
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 27382878 | 27383903 | - | COCNU_16G004000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.02 | 29,560.53 Da | 27.90 | 90.97 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 9 | 242 | 2.71286E-54 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 126 | 163 | 1.8E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 84 | 121 | 1.0E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 198 | 231 | 7.6E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 44 | 79 | 2.1E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 4 | 237 | 2.24E-56 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 244 | 3.1E-90 | IPR015943 |
| SMART | SM00320 | WD40_4 | 82 | 121 | 1.3E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 124 | 163 | 5.3E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 193 | 232 | 4.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 40 | 79 | 4.6E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2 | 37 | 31.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 89 | 130 | 13.68318 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 200 | 241 | 13.081652 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 89 | 121 | 10.864685 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 131 | 164 | 14.485216 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 47 | 88 | 13.716598 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 47 | 82 | 10.68014 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 200 | 234 | 10.495596 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 131 | 164 | 11.971952 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 150 | 164 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 219 | 233 | 1.7E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 108 | 122 | 1.7E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 150 | 164 | 1.7E-8 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62020.1 | Coatomer, alpha subunit. | 0 |
| RefSeq | XP_022884749.1 | coatomer subunit alpha-1-like isoform X1 [Olea europaea var. sylvestris] | 0 |
| Q94A40 | Coatomer subunit alpha-1 OS=Arabidopsis thaliana OX=3702 GN=At1g62020 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8K0IYC2 | Coatomer subunit alpha-1-like protein OS=Cocos nucifera OX=13894 GN=COCNU_16G004000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda glauca | 4 | Sgl43929, Sgl43938, Sgl48695, Sgl48702 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30047220, pistato.v30159560 |
| Arecaceae | Cocos nucifera | 1 | COCNU_16G004000 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g00570.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g017100.2N |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g36000 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g10250 |