Basic Information
Locus ID:
COCNU_16G003850
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 27169940 | 27203572 | + | COCNU_16G003850 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.75 | 125,650.25 Da | 40.67 | 82.34 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 449 | 485 | 0.0018 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 916 | 950 | 6.8E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 332 | 433 | 1.23E-8 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 976 | 1096 | 8.97E-6 | IPR036322 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 412 | 955 | 3.3E-44 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 292 | 537 | 2.3E-32 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 768 | 1104 | 2.7E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 538 | 674 | 4.3E-7 | IPR015943 |
| SMART | SM00320 | WD40_4 | 338 | 377 | 0.0012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 531 | 574 | 150.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1065 | 1097 | 270.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1000 | 1042 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 911 | 950 | 3.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 868 | 908 | 2.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 399 | 438 | 58.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 487 | 528 | 4.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 577 | 617 | 0.57 | IPR001680 |
| SMART | SM00320 | WD40_4 | 444 | 485 | 4.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 823 | 865 | 150.0 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 1.7E-13 | IPR006595 |
| SMART | SM00667 | Lish | 4 | 36 | 9.3E-5 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 918 | 959 | 13.181907 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 344 | 386 | 8.637032 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 451 | 486 | 9.873505 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.296905 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 595 | 626 | 9.539323 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.071995 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 918 | 953 | 10.574686 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 472 | 486 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1115 | 1136 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1122 | 1136 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 702 | 741 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16830.1 | TOPLESS-related 2. | 0 |
| RefSeq | XP_010938346.1 | protein TPR1 isoform X1 [Elaeis guineensis] | 0 |
| Q5NBT9 | Protein TPR1 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0IYB3 | Protein TPR1 OS=Cocos nucifera OX=13894 GN=COCNU_16G003850 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology