Basic Information
Locus ID:
COCNU_16G003780
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 26995477 | 26996307 | - | COCNU_16G003780 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.61 | 29,471.15 Da | 80.26 | 80.25 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 85 | 127 | 1.50488E-19 | - |
| Pfam | PF13639 | Ring finger domain | 84 | 127 | 7.4E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 80 | 133 | 2.99E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 46 | 133 | 1.1E-21 | IPR013083 |
| SMART | SM01197 | FANCL_C_2 | 81 | 135 | 0.0029 | - |
| SMART | SM00184 | ring_2 | 85 | 126 | 7.1E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 85 | 127 | 12.740079 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 276 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 259 | 276 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16720.1 | TOXICOS EN LEVADURA 2. RING-H2 protein induced after exposure to chitin or inactivated crude cellulase preparations. | 0 |
| RefSeq | XP_010938358.1 | RING-H2 finger protein ATL2 [Elaeis guineensis] | 0 |
| Q8L9T5 | RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8K0NFI9 | RING-type E3 ubiquitin transferase OS=Cocos nucifera OX=13894 GN=COCNU_16G003780 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology