Basic Information
Locus ID:
COCNU_16G002920
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 25024720 | 25079184 | + | COCNU_16G002920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 161,092.09 Da | 51.92 | 93.99 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14010 | STKc_ULK4 | 326 | 566 | 4.87327E-144 | - |
| Pfam | PF12906 | RING-variant domain | 192 | 225 | 8.2E-5 | IPR011016 |
| Pfam | PF00069 | Protein kinase domain | 326 | 565 | 1.7E-62 | IPR000719 |
| SUPERFAMILY | SSF48371 | ARM repeat | 495 | 1327 | 4.32E-10 | IPR016024 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 326 | 607 | 1.75E-78 | IPR011009 |
| Gene3D | G3DSA:1.25.10.10 | - | 858 | 1065 | 7.2E-8 | IPR011989 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 324 | 615 | 1.7E-78 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 177 | 245 | 2.7E-7 | IPR013083 |
| SMART | SM00220 | serkin_6 | 323 | 566 | 2.7E-77 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 279 | 566 | 45.488171 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 426 | 438 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 594 | 650 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 719 | 733 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 674 | 702 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 594 | 632 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 674 | 737 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 703 | 718 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 108 | 131 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18700.1 | Protein kinase family protein with ARM repeat domain. Encodes a microtubule-associated kinase-like protein RUNKEL (RUK). Contains a putative serine/threonine kinase domain and a microtubule-binding domain. RUK directly binds to microtubules in vitro and colocalizes with mitotic preprophase band, spindle, and phragmoplast in vivo. Required for cell plate expansion in cytokinesis. | 0 |
| RefSeq | XP_010938695.1 | serine/threonine-protein kinase RUNKEL [Elaeis guineensis] | 0 |
| F4JY37 | Serine/threonine-protein kinase RUNKEL OS=Arabidopsis thaliana OX=3702 GN=RUK PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0IY03 | Putative Serine/threonine-protein kinase Aurora-3 OS=Cocos nucifera OX=13894 GN=COCNU_16G002920 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg5696 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4224 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah020593 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g191600 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg24770, Sbi_jg41685, Sbi_jg48458, Sbi_jg8634 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg19970, Seu_jg27764 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00022287, GOSA_00027236 |
| Amaranthaceae | Suaeda glauca | 8 | Sgl00072, Sgl05142, Sgl05143, Sgl05155, Sgl05160, Sgl42635 ... |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000012735, gene:ENSEOMG00000032130 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0015770, CQ.Regalona.r1.3BG0016730 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30238410, pistato.v30245450 |
| Apiaceae | Apium graveolens | 1 | Ag5G02447 |
| Arecaceae | Cocos nucifera | 1 | COCNU_16G002920 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711717 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1517.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G20824 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G18700.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012450m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g25640.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g044010.2N, BniB08g009460.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G0959, Ceq09G1225 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl03G1033, Cgl03G1039, Cgl09G1314 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g04950 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0075s00021.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g03590 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-5064, nbisL1-mrna-5065 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1368 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026208 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G08817, Lb2G08818, Lb2G08820 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.966, BH02.1157, CH02.1274 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0005050, gene-QOZ80_1BG0053560 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0193160.1, HORVU.MOREX.r3.3HG0254050.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_052177 |
| Poaceae | Oryza coarctata | 2 | Oco01G006990, Oco02G007320 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g15480.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G106800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0604022, Pt_Chr0605285 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G026290, Chr03G001880, Chr05G004030, Chr08G003230 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G739900, Tel3E01G308600 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG062730, gene_TRIDC2BG066680 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS2A02G436400.1, TraesCS2B02G456800.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb127880_P001, Zm00001eb333450_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-32444, nbis-gene-7302 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g7399, Zma_g9729 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.2016, evm.TU.LG14.316 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g34030 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.648 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-16040 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16706 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-539, nbisL1-mrna-540 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.385 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007779 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13690 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3591 |
| Salicaceae | Populus euphratica | 3 | populus_peu07801, populus_peu09144, populus_peu37742 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609350 |
| Solanaceae | Solanum chilense | 1 | SOLCI001690200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028809 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8495 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1556 |
| Zosteraceae | Zostera marina | 1 | Zosma01g20210.v3.1 |