Basic Information
Locus ID:
COCNU_16G002780
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Short Name:
RHC1A
Description:
zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 24689621 | 24690394 | + | COCNU_16G002780 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.59 | 29,125.50 Da | 66.43 | 50.47 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 163 | 204 | 4.5165E-25 | - |
| Pfam | PF13639 | Ring finger domain | 162 | 204 | 2.7E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 143 | 213 | 1.44E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 125 | 210 | 6.5E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 163 | 203 | 6.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 163 | 204 | 12.267982 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 211 | 231 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 213 | 231 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G56580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010938677.1 | probable E3 ubiquitin-protein ligase RHC1A [Elaeis guineensis] | 0 |
| Q94AK4 | E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0IY70 | Putative E3 ubiquitin-protein ligase RHC1A OS=Cocos nucifera OX=13894 GN=COCNU_16G002780 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology