Basic Information
Locus ID:
COCNU_16G001940
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
rho GTPase-activating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 21991379 | 22062473 | + | COCNU_16G001940 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.19 | 83,309.19 Da | 51.95 | 78.74 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00159 | RhoGAP | 180 | 319 | 6.8251E-31 | - |
| CDD | cd00821 | PH | 24 | 119 | 3.72649E-11 | - |
| Pfam | PF14389 | Leucine-zipper of ternary complex factor MIP1 | 501 | 581 | 3.9E-22 | IPR025757 |
| Pfam | PF00620 | RhoGAP domain | 180 | 324 | 2.7E-31 | IPR000198 |
| Pfam | PF00169 | PH domain | 23 | 127 | 4.2E-12 | IPR001849 |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 180 | 373 | 2.55E-33 | IPR008936 |
| SUPERFAMILY | SSF50729 | PH domain-like | 19 | 134 | 3.56E-17 | - |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 155 | 373 | 2.4E-40 | IPR008936 |
| Gene3D | G3DSA:2.30.29.30 | - | 12 | 129 | 9.3E-17 | IPR011993 |
| SMART | SM00324 | RhoGAP_3 | 177 | 368 | 3.4E-25 | IPR000198 |
| SMART | SM00233 | PH_update | 22 | 130 | 1.6E-14 | IPR001849 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 171 | 371 | 29.172066 | IPR000198 |
| ProSiteProfiles | PS50003 | PH domain profile. | 21 | 128 | 14.777 | IPR001849 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 728 | 754 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 417 | 461 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 377 | 403 | - | - |
| Coils | Coil | Coil | 707 | 727 | - | - |
| Coils | Coil | Coil | 550 | 584 | - | - |
| Coils | Coil | Coil | 491 | 525 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19390.1 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a protein with similarity to REN1, a Rho GTPase activating protein. | 0 |
| RefSeq | XP_010938548.1 | rho GTPase-activating protein 7 isoform X2 [Elaeis guineensis] | 0 |
| Q8RWQ4 | Rho GTPase-activating protein 7 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0IY17 | Rho GTPase-activating protein 7-like OS=Cocos nucifera OX=13894 GN=COCNU_16G001940 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology