Basic Information
Locus ID:
COCNU_15G006310
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 22485637 | 22487417 | - | COCNU_15G006310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.76 | 42,175.30 Da | 54.23 | 77.35 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 198 | 229 | 0.16 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 288 | 321 | 0.035 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 76 | 324 | 3.16E-30 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 18 | 380 | 2.2E-36 | IPR015943 |
| SMART | SM00320 | WD40_4 | 143 | 188 | 1.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 281 | 321 | 3.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 191 | 229 | 6.3E-4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 288 | 324 | 9.124694 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 288 | 324 | 10.876051 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 308 | 322 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 134 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 145 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12910.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a protein with similarity to the petunia WD repeat protein an11. | 0 |
| RefSeq | XP_010929534.1 | WD repeat-containing protein LWD1 [Elaeis guineensis] | 0 |
| Q9LPV9 | WD repeat-containing protein LWD1 OS=Arabidopsis thaliana OX=3702 GN=LWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0IXD9 | WD repeat-containing protein LWD1 OS=Cocos nucifera OX=13894 GN=COCNU_15G006310 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology