Basic Information
Locus ID:
COCNU_15G006120
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Zinc-finger of the MIZ type in Nse subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 21766484 | 21771246 | - | COCNU_15G006120 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.16 | 117,023.41 Da | 52.77 | 100.99 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16452 | SP-RING_like | 282 | 323 | 2.2595E-14 | - |
| Pfam | PF04564 | U-box domain | 281 | 349 | 1.8E-11 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 452 | 795 | 2.27E-35 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 280 | 348 | 1.2E-20 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 814 | 1024 | 6.04E-9 | IPR016024 |
| SUPERFAMILY | SSF48371 | ARM repeat | 354 | 504 | 1.73E-9 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 347 | 448 | 7.4E-8 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 280 | 346 | 2.2E-21 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 450 | 891 | 4.5E-32 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 892 | 1051 | 5.9E-6 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 281 | 344 | 1.0E-14 | IPR003613 |
| SMART | SM00185 | arm_5 | 381 | 420 | 81.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 464 | 502 | 8.7 | IPR000225 |
| SMART | SM00185 | arm_5 | 924 | 966 | 71.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 971 | 1011 | 59.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 830 | 870 | 31.0 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 473 | 501 | 10.9374 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 277 | 351 | 15.79134 | IPR003613 |
| Coils | Coil | Coil | 219 | 249 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76390.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_029122242.1 | U-box domain-containing protein 44 [Elaeis guineensis] | 0 |
| Q9SFX2 | U-box domain-containing protein 43 OS=Arabidopsis thaliana OX=3702 GN=PUB43 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0IY73 | RING-type E3 ubiquitin transferase OS=Cocos nucifera OX=13894 GN=COCNU_15G006120 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 1 | pistato.v30167590 |
| Arecaceae | Cocos nucifera | 1 | COCNU_15G006120 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712369 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0917 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0960 |
| Salicaceae | Populus euphratica | 2 | populus_peu03893, populus_peu34722 |