Basic Information
Locus ID:
COCNU_15G005680
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Alpha mannosidase, middle domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 20063603 | 20073623 | - | COCNU_15G005680 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 71,467.60 Da | 46.53 | 83.43 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF09261 | Alpha mannosidase middle domain | 129 | 221 | 1.7E-22 | IPR015341 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 12 | 73 | 8.1E-8 | IPR000602 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 466 | 533 | 2.6E-18 | IPR011682 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 373 | 465 | 1.9E-6 | IPR011682 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 12 | 127 | 1.33E-18 | IPR011330 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 232 | 623 | 2.83E-91 | IPR011013 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 129 | 228 | 2.06E-29 | IPR028995 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 6 | 79 | 1.4E-11 | IPR027291 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 90 | 171 | 1.4E-32 | IPR037094 |
| Gene3D | G3DSA:2.70.98.30 | - | 466 | 581 | 2.0E-42 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 172 | 228 | 3.4E-23 | IPR037094 |
| Gene3D | G3DSA:2.70.98.30 | - | 372 | 465 | 2.9E-17 | - |
| Gene3D | G3DSA:2.60.40.1180 | - | 249 | 371 | 6.1E-29 | IPR013780 |
| SMART | SM00872 | Alpha_mann_mid_2 | 129 | 203 | 1.5E-23 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13980.3 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_010929675.1 | alpha-mannosidase At3g26720 [Elaeis guineensis] | 0 |
| Q8LPJ3 | Probable alpha-mannosidase At5g13980 OS=Arabidopsis thaliana OX=3702 GN=At5g13980 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0IZ19 | Alpha-mannosidase OS=Cocos nucifera OX=13894 GN=COCNU_15G005680 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology