Basic Information
Locus ID:
COCNU_15G005600
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Short Name:
AFB3
Description:
Transport inhibitor response 1-like protein Os04g0395600
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 19829638 | 19832019 | - | COCNU_15G005600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 63,979.38 Da | 41.66 | 93.43 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 1 | 41 | 2.9E-17 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 61 | 107 | 1.3E-23 | IPR041101 |
| SUPERFAMILY | SSF52047 | RNI-like | 21 | 530 | 1.38E-39 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 41 | 575 | 2.8E-182 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 40 | 3.5E-16 | - |
| SMART | SM00367 | LRR_CC_2 | 124 | 149 | 130.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 366 | 390 | 1.4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 475 | 500 | 260.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 205 | 225 | 480.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 4 | 45 | 0.01 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 309 | 332 | 160.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 283 | 308 | 190.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 99 | 123 | 9.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 426 | 449 | 250.0 | IPR006553 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26810.1 | auxin signaling F-box 2. | 0 |
| RefSeq | XP_010929637.1 | transport inhibitor response 1-like protein Os04g0395600 [Elaeis guineensis] | 0 |
| Q7XVM8 | Transport inhibitor response 1-like protein Os04g0395600 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0395600 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0ND10 | Transport inhibitor response 1-like protein OS=Cocos nucifera OX=13894 GN=COCNU_15G005600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology