Basic Information
Locus ID:
COCNU_15G004990
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Short Name:
MADS34
Description:
MADS-box transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 17162522 | 17163644 | + | COCNU_15G004990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.12 | 7,678.90 Da | 52.69 | 103.23 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 3 | 61 | 1.60395E-35 | IPR033896 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 2.0E-25 | IPR002100 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 67 | 2.62E-27 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 13 | 67 | 8.7E-23 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 2.0E-36 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 30.655596 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 2.6E-29 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 2.6E-29 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 2.6E-29 | IPR002100 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02310.2 | - | 0 |
| RefSeq | XP_029119491.1 | truncated transcription factor CAULIFLOWER A [Elaeis guineensis] | 0 |
| Q40170 | Agamous-like MADS-box protein AGL8 homolog OS=Solanum lycopersicum OX=4081 GN=TDR4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0NEA7 | Putative Agamous-like MADS-box protein AGL8 OS=Cocos nucifera OX=13894 GN=COCNU_15G004990 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology