Basic Information
Locus ID:
COCNU_15G004480
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 14314550 | 14316254 | + | COCNU_15G004480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.73 | 27,409.14 Da | 72.99 | 73.46 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 209 | 246 | 2.44623E-8 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 207 | 252 | 1.3E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 208 | 253 | 9.42E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 184 | 257 | 7.2E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 209 | 246 | 8.4E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 209 | 247 | 11.250026 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 114 | 157 | - | - |
| Coils | Coil | Coil | 184 | 206 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22250.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021294678.1 | LOW QUALITY PROTEIN: death-associated inhibitor of apoptosis 1 [Herrania umbratica] | 0 |
| TrEMBL | A0A8K0IYT2 | RING-type domain-containing protein OS=Cocos nucifera OX=13894 GN=COCNU_15G004480 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology