Basic Information
Locus ID:
COCNU_15G004400
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Short Name:
UBP5
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 13359983 | 13386425 | - | COCNU_15G004400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.56 | 80,999.02 Da | 48.02 | 87.19 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 237 | 678 | 5.2E-46 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 235 | 716 | 2.16E-58 | IPR038765 |
| Gene3D | G3DSA:3.10.20.90 | - | 66 | 150 | 3.0E-12 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 223 | 463 | 7.7E-68 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 237 | 658 | 27.829235 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 238 | 253 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40930.1 | ubiquitin-specific protease 5. Encodes ubiquitin-specific protease with nuclear localization signals that is likely to be involved in ubiquitin-mediated protein degradation. | 0 |
| RefSeq | XP_010929801.1 | ubiquitin carboxyl-terminal hydrolase 5 [Elaeis guineensis] | 0 |
| O22207 | Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana OX=3702 GN=UBP5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8K0NCW8 | Ubiquitin carboxyl-terminal hydrolase 9-like OS=Cocos nucifera OX=13894 GN=COCNU_15G004400 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology